PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G217400.1.p
Common NameGLYMA_15G217400, LOC100793976
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 508aa    MW: 54991.1 Da    PI: 7.8623
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G217400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.76e-11147171226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          +++ C +++ t tCk+Gd+CkF H+
  Glyma.15G217400.1.p 147 GEKDCAHYMLTRTCKFGDSCKFDHP 171
                          7889********************9 PP
2zf-CCCH34.82.9e-11198224127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++ C++f++t  Ck+G++CkF+H++
  Glyma.15G217400.1.p 198 PGEPDCPYFLKTQRCKFGSKCKFNHPK 224
                          5789*********************96 PP
3zf-CCCH37.15.2e-12242266327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C f+++tG C+yG  CkF+H++
  Glyma.15G217400.1.p 242 EPPCAFYMKTGKCRYGTACKFHHPK 266
                          79*********************96 PP
4zf-CCCH39.49.9e-13319342326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          ++ C+f+++tG CkyG +C+++H+
  Glyma.15G217400.1.p 319 EVDCPFYMKTGSCKYGVSCRYNHP 342
                          689********************9 PP
5zf-CCCH38.61.8e-12403426326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          + +C+f+++tG Ck+G+rCk++H+
  Glyma.15G217400.1.p 403 QIECDFYMKTGVCKFGERCKYHHP 426
                          568********************8 PP
6zf-CCCH40.73.8e-13454477427
                          ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          ++C+++++tGtCk+G++CkF H+p
  Glyma.15G217400.1.p 454 VICPYYLKTGTCKFGATCKFDHPP 477
                          68********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.244145173IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-4145172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5145172IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8147171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4151170IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-6197224IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187197225IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8199224IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-5202223IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4203222IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-6239266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817239267IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9242266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6243267IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5244265IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408316344IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-7316343IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-10319342IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5320343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4322341IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.075400428IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6400427IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-6402428IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-10404426IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-5406426IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-7450477IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004450478IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-5454477IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-10454477IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-6455475IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MENHIYAASY SPSTNYRSFR DPPADTMFLS HHLHHHRTDA SSAAALRFPS SALSAVEAAD  60
IAPPGVTSRI ASSSAAAAAA NFLSTWPPAA AAAPSALDLK RSSEALYHPT ILGTIGQSEA  120
WYSTNPLAKR PRYESASNMT IYPQRPGEKD CAHYMLTRTC KFGDSCKFDH PVWVPEGGIP  180
DWKEVPNVVT SETPPERPGE PDCPYFLKTQ RCKFGSKCKF NHPKVSSENA DVSSGLPERP  240
SEPPCAFYMK TGKCRYGTAC KFHHPKDIQI QLSDDLSQNV AQTQTNSMMG GATGDTQPIK  300
SLISPSLQNS KGLPVRLGEV DCPFYMKTGS CKYGVSCRYN HPDRNAINPP IAGLGASILP  360
SSAANLNIGL LNPAVSAYQA FEPRLSNPMV GIAETIYPQR PGQIECDFYM KTGVCKFGER  420
CKYHHPIDRS ALSLSKQATV KLTPAGLPRR EGDVICPYYL KTGTCKFGAT CKFDHPPPGE  480
VMEMAKSQGT SANGEEAEGD TSALEQL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.283690.0cotyledon| hypocotyl| meristem| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G217400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352781e-174AC235278.1 Glycine max strain Williams 82 clone GM_WBb0048F23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003545729.10.0zinc finger CCCH domain-containing protein 37
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLK7MCY10.0K7MCY1_SOYBN; Uncharacterized protein
STRINGGLYMA15G30265.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Representative plantOGRP67541519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)