PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G206200.1.p | ||||||||
Common Name | GLYMA_15G206200, LOC100776075 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARR-B | ||||||||
Protein Properties | Length: 702aa MW: 76856.1 Da PI: 6.1364 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.7 | 6.2e-29 | 206 | 259 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G +kA+Pk+il+lm+v+gLt+e+v+SHLQkYRl Glyma.15G206200.1.p 206 KPRVVWSVELHRKFVAAVNQL-GLDKAVPKKILDLMNVEGLTRENVASHLQKYRL 259 79*******************.********************************8 PP | |||||||
2 | Response_reg | 83.6 | 6e-28 | 21 | 129 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl vdD+p+ +++l+++l+k +y +v+++ ++ eal++l+e++ +Dl++ D++mp++dG++ll+ e++lp+i+++ahg+ +++ + Glyma.15G206200.1.p 21 VLAVDDDPICLKVLENLLRKCQY-HVTTTNQAVEALKMLRENRnkFDLVISDVNMPDIDGFKLLELVGL-EMDLPVIMLSAHGDTKLVMK 108 799********************.***************999889*******************87754.558***************** PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ +eel + Glyma.15G206200.1.p 109 GVTHGACDYLLKPVRIEELKN 129 ******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 2.9E-164 | 1 | 700 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 4.13E-36 | 18 | 142 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 6.5E-43 | 18 | 152 | No hit | No description |
SMART | SM00448 | 7.8E-34 | 19 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 44.038 | 20 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.6E-25 | 21 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 8.57E-29 | 22 | 134 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-30 | 203 | 263 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.009 | 203 | 262 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.73E-20 | 204 | 263 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.6E-25 | 206 | 259 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-7 | 208 | 258 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 702 aa Download sequence Send to blast |
MAVEKQREDE GCDRFPVGMR VLAVDDDPIC LKVLENLLRK CQYHVTTTNQ AVEALKMLRE 60 NRNKFDLVIS DVNMPDIDGF KLLELVGLEM DLPVIMLSAH GDTKLVMKGV THGACDYLLK 120 PVRIEELKNI WQHVVRRKNF DSRDQNKASN EEKAPNIAGE GSQGLRSENS ADQNKRLGKK 180 RKDQSEEEEE DGEENGDDED PSAQKKPRVV WSVELHRKFV AAVNQLGLDK AVPKKILDLM 240 NVEGLTRENV ASHLQKYRLY LKKAAQQANM VAALGGSDSY LRMGSIDGYG DFCTSSGSGR 300 ITNTTSPSYA STGIFSRLNS PAALNMRAIS SSALIRPVQS QNINCSLNTL GNIQPSVFPA 360 NHSSSLLQGI PTSIELNQSK QSNCTTGISQ LSQVDSSGFA VASGFPDSRA TVNGPNNSLP 420 CVSNNHIMLQ GNPQQMHGPG AFRNQSSVRA ASLCAESFDA GLCSSSNLLD YNRCNENWQN 480 AAQLSKFPAH SLPLCEAFSN DQLPPTRINV SNSRTHIVNS PVDFSSRMGI SVPLEDTRNE 540 LACQEGLIGN IVKPSSYTPQ QRWEEHKLDY NQNVGHSFNP VNSHASSSGV KSSMGHGLNQ 600 NNTICSNRVD ASLVGQLNGA SPSISRCTEV EKFSSDIRLK PNEAYILEQM KSQDGFMQNT 660 FGTLDDIMGA MVKRTTMQEQ NELTLLDGEM GFDAYPVGSC N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-25 | 202 | 265 | 1 | 64 | ARR10-B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 174 | 182 | KRLGKKRKD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.55413 | 0.0 | hypocotyl |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G206200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094204 | 0.0 | BT094204.1 Soybean clone JCVI-FLGm-18G16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014623661.1 | 0.0 | two-component response regulator ARR12 isoform X1 | ||||
Swissprot | Q6K8X6 | 1e-142 | ORR23_ORYSJ; Two-component response regulator ORR23 | ||||
TrEMBL | A0A0R0G3R5 | 0.0 | A0A0R0G3R5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G24770.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 | Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-129 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G206200.1.p |
Entrez Gene | 100776075 |
Publications ? help Back to Top | |||
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