PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G192000.2.p | ||||||||
Common Name | GLYMA_15G192000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LSD | ||||||||
Protein Properties | Length: 177aa MW: 18624.5 Da PI: 8.4357 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 43.8 | 4.2e-14 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L YPrGA++V+CalC+tV Glyma.15G192000.2.p 7 CNGCRNILVYPRGATNVCCALCNTV 31 ************************9 PP | |||||||
2 | zf-LSD1 | 45.9 | 9.4e-15 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC tlL+Y+rGA+sVRC++C+t+ Glyma.15G192000.2.p 46 CGGCTTLLMYTRGATSVRCSCCHTI 70 ***********************97 PP | |||||||
3 | zf-LSD1 | 42.1 | 1.5e-13 | 84 | 106 | 1 | 23 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 C +Crt+L+YP+GA+sV+Ca+C Glyma.15G192000.2.p 84 CTNCRTTLMYPYGASSVKCAICR 106 99********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.3E-13 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.4E-11 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.3E-15 | 43 | 73 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.0E-12 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.8E-11 | 82 | 110 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.1E-13 | 84 | 108 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MGSQLVCNGC RNILVYPRGA TNVCCALCNT VTSVPPPGMD MSQLYCGGCT TLLMYTRGAT 60 SVRCSCCHTI NLVPVLESNQ VIHCTNCRTT LMYPYGASSV KCAICRYITN VSMTNGRLPI 120 PVQRPNGTAN SGTVSSTSSS MPHSQSQTVV VENPMSVDSS GKLVSNVVVG VTTEKK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.20449 | 0.0 | flower| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, roots, rosette leaves, stems, inflorescences and flowers. {ECO:0000269|PubMed:20456049}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of reactive oxygen-induced cell death, cold stress-induced cell death, pathogen-induced hypersensitive response (HR), basal disease resistance. May be involved in the induction of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. Antagonizes the function of BZIP10, a positive regulator of cell death, by interacting in the cytoplasm and preventing its nuclear localization. Controls lysigenous aerenchyma in hypocotyls under root hypoxia. Required for leaf acclimation in response to excess excitation energy. {ECO:0000269|PubMed:10550898, ECO:0000269|PubMed:11595797, ECO:0000269|PubMed:11844114, ECO:0000269|PubMed:12732715, ECO:0000269|PubMed:15347794, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:18055613, ECO:0000269|PubMed:18790826, ECO:0000269|PubMed:20456049, ECO:0000269|PubMed:21097903}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G192000.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By methyl viologen. {ECO:0000269|PubMed:20456049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003546559.1 | 1e-123 | protein LSD1 isoform X2 | ||||
Refseq | XP_028202517.1 | 1e-123 | protein LSD1-like isoform X2 | ||||
Swissprot | P94077 | 1e-70 | LSD1_ARATH; Protein LSD1 | ||||
TrEMBL | A0A445GVM5 | 1e-124 | A0A445GVM5_GLYSO; Protein LSD1 isoform D (Fragment) | ||||
STRING | GLYMA15G22140.1 | 1e-114 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 3e-70 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G192000.2.p |
Publications ? help Back to Top | |||
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