![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.15G192000.1.p | ||||||||
Common Name | GLYMA_15G192000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | LSD | ||||||||
Protein Properties | Length: 203aa MW: 21883.5 Da PI: 8.5471 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 43.5 | 5.1e-14 | 33 | 57 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L YPrGA++V+CalC+tV Glyma.15G192000.1.p 33 CNGCRNILVYPRGATNVCCALCNTV 57 ************************9 PP | |||||||
2 | zf-LSD1 | 45.6 | 1.2e-14 | 72 | 96 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC tlL+Y+rGA+sVRC++C+t+ Glyma.15G192000.1.p 72 CGGCTTLLMYTRGATSVRCSCCHTI 96 ***********************97 PP | |||||||
3 | zf-LSD1 | 41.8 | 1.8e-13 | 110 | 132 | 1 | 23 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 C +Crt+L+YP+GA+sV+Ca+C Glyma.15G192000.1.p 110 CTNCRTTLMYPYGASSVKCAICR 132 99********************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 4.1E-13 | 30 | 60 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.8E-11 | 33 | 57 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.6E-15 | 69 | 99 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.7E-12 | 72 | 96 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.7E-11 | 108 | 136 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.4E-13 | 110 | 134 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 203 aa Download sequence Send to blast |
MFLSHFRQIS FNFIIIIIII SWGFWFMGSQ LVCNGCRNIL VYPRGATNVC CALCNTVTSV 60 PPPGMDMSQL YCGGCTTLLM YTRGATSVRC SCCHTINLVP VLESNQVIHC TNCRTTLMYP 120 YGASSVKCAI CRYITNVSMT NGRLPIPVQR PNGTANSGTV SSTSSSMPHS QSQTVVVENP 180 MSVDSSGKLV SNVVVGVTTE KK* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.20449 | 0.0 | flower| leaf |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, roots, rosette leaves, stems, inflorescences and flowers. {ECO:0000269|PubMed:20456049}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Negative regulator of reactive oxygen-induced cell death, cold stress-induced cell death, pathogen-induced hypersensitive response (HR), basal disease resistance. May be involved in the induction of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. Antagonizes the function of BZIP10, a positive regulator of cell death, by interacting in the cytoplasm and preventing its nuclear localization. Controls lysigenous aerenchyma in hypocotyls under root hypoxia. Required for leaf acclimation in response to excess excitation energy. {ECO:0000269|PubMed:10550898, ECO:0000269|PubMed:11595797, ECO:0000269|PubMed:11844114, ECO:0000269|PubMed:12732715, ECO:0000269|PubMed:15347794, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:18055613, ECO:0000269|PubMed:18790826, ECO:0000269|PubMed:20456049, ECO:0000269|PubMed:21097903}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.15G192000.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By methyl viologen. {ECO:0000269|PubMed:20456049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003546559.1 | 1e-124 | protein LSD1 isoform X2 | ||||
Refseq | XP_028202517.1 | 1e-124 | protein LSD1-like isoform X2 | ||||
Swissprot | P94077 | 1e-70 | LSD1_ARATH; Protein LSD1 | ||||
TrEMBL | A0A0R0G337 | 1e-144 | A0A0R0G337_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G22140.1 | 1e-114 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4027 | 33 | 61 | Representative plant | OGRP1146 | 17 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20380.7 | 3e-70 | LSD family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.15G192000.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|