PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G190200.2.p | ||||||||
Common Name | GLYMA_15G190200, LOC100792774 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SBP | ||||||||
Protein Properties | Length: 1033aa MW: 114474 Da PI: 7.0491 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.7 | 1.1e-40 | 147 | 224 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls++k+yhrrhkvC++hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Glyma.15G190200.2.p 147 VCQVEDCRADLSNVKDYHRRHKVCDMHSKATQALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 224 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.1E-32 | 142 | 209 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.017 | 145 | 222 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.24E-38 | 146 | 227 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.7E-29 | 148 | 221 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 4.19E-6 | 803 | 918 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.4E-5 | 804 | 915 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.82E-6 | 804 | 914 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1033 aa Download sequence Send to blast |
MEARLEGKNQ YLYGPVVPEV KSVGKRTLEW DLNDWKWDGD LFTARQLNSV PSDCRSRELF 60 PADPEILVTG DASNNLSSAY DDVNLGEGKR ELEKRRRGVI DEGGVEMNDG AGSLNLNLGG 120 QVYPIMEGEE KSGKKTKLTA STSSRAVCQV EDCRADLSNV KDYHRRHKVC DMHSKATQAL 180 VGNVMQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNKRRR KTHPDATVVN GGSLNEEKGS 240 SYLLMSLLRI LSNMHSNGSD NMRNQDVLSH LLRNLASLTG TINGRNIVSL LEGSQDLVKA 300 GTSGAAQNVP NTNSNGPEPS RPLYSSIKMD DGLIHRDPPE SLVQCETTPA NDMAKECIAS 360 GNDEVGSLKS PSVPLSTNVL LSMDSLPPQS IAAQTTVGRI GLSNIDLNNV YDDVQDYVEN 420 TRNCRPPLPS GNGSLDHPLL VQCDSLKSSP PQTSRNSDST STQSPSSSSG EAQSRTDRIV 480 FKLFGKAPND FPHALRSQIL NWLSHSPTEI ESYIRPGCIM LTIYLRLENS AWEELCYNLG 540 PSLRKLAASN DCFWRTGWIY TRVQHSVAFL YNGQVVLDAP LRLKSPQSCQ ILCVKPLAVS 600 ASSCAQFVLK GFNFLLSNSR LLCALEGKYL VQDNCYDLID SVDAANGHHE LQHLRFSCHV 660 PNVTGRGFIE VEDNGLSSCS FPFIVAEQEI CSEICKLENV IEAAETADDI QIKTKLMEEK 720 TQALYFIQEM GWLLHRSRVK VRLGPVAPVQ DNFHFNRFMW LVGFSMDHDW CAVMKKLLNI 780 VFEGTVDTGD HASVELALLE MGLLHKAVKR NFRPMVELLL KFVPVKASDG GDSNEKQINK 840 SPDRFLFRPD TVGPARLTPL HVAASMHGSE NVLDALTDDP GMVGSEAWKS AQDATGLTPY 900 DYASLRGYYS YIQLVQRKTS NTCKNQQHVL DIPGNLVDSN TKQKQSDGHR SSKVLSLQTE 960 KIETTAMRHC GLCQQKLVYG GMRRALVFRP AMLSMVAIAA VCVCVALLFK SSPKVYYVFQ 1020 PFSWESLEYG SI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-29 | 139 | 221 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 216 | 222 | KRRRKTH |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.39289 | 0.0 | hypocotyl |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G190200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014623368.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_025981528.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
TrEMBL | I1MHQ9 | 0.0 | I1MHQ9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G21860.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60030.1 | 0.0 | squamosa promoter-binding protein-like 12 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G190200.2.p |
Entrez Gene | 100792774 |