PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G176500.2.p
Common NameGLYMA_15G176500, LOC100781613
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 364aa    MW: 41210.5 Da    PI: 7.8868
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G176500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.91e-2477120144
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                          d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  Glyma.15G176500.2.p  77 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 120
                          79***************************************987 PP
2QLQ56.86.6e-20943236
                  QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                         +FT++Q+q+L++Q+l+yKy+a++  +Pp+Ll+ i+
  Glyma.15G176500.2.p  9 PFTPSQWQELEHQALIYKYMASGISIPPDLLFTIK 43
                         8******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-11844IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.36944IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.5E-15942IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.9877121IPR014977WRC domain
PfamPF088791.3E-2078120IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MMNGRNRFPF TPSQWQELEH QALIYKYMAS GISIPPDLLF TIKRSYFDSP LSSRLLPNQP  60
QHFGWNYLQM GLGRKIDPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR GKNRSRKPVE  120
VLKSTTTPSS STTNSNASST QQAISSITKI NSTLSPLASS ETHQHHHYPQ HYGSFLYHHH  180
PPSRSSGIGL SFEDNSAPLF LDTGSCSQSN TDCRYVYGEK EEVDEHAFFT EPCGVMKSFS  240
ASSMDDSWQL TPLTMSSSSS SSKQRSSFGL SSDYSCLQLQ SHSKQQQQEH HQDQGCYMFG  300
AGQVVKEEPQ KTVHRFFDEW PHKGREGSWL DLDDKSSTTQ LSISIPTSSH DFSTFSSRTH  360
HDG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.278720.0cotyledon| hypocotyl| root| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G176500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-118AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014622885.10.0growth-regulating factor 1 isoform X2
RefseqXP_028202880.10.0growth-regulating factor 1-like isoform X2
TrEMBLA0A0R0GBY50.0A0A0R0GBY5_SOYBN; Uncharacterized protein
STRINGGLYMA15G19460.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-54growth-regulating factor 5