PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G176500.1.p
Common NameGLYMA_15G176500, LOC100781613
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 366aa    MW: 41453.7 Da    PI: 8.0704
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G176500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.91e-2477120144
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                          d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  Glyma.15G176500.1.p  77 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 120
                          79***************************************987 PP
2QLQ56.86.6e-20943236
                  QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                         +FT++Q+q+L++Q+l+yKy+a++  +Pp+Ll+ i+
  Glyma.15G176500.1.p  9 PFTPSQWQELEHQALIYKYMASGISIPPDLLFTIK 43
                         8******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-11844IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.6E-15942IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.36944IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.9877121IPR014977WRC domain
PfamPF088791.3E-2078120IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MMNGRNRFPF TPSQWQELEH QALIYKYMAS GISIPPDLLF TIKRSYFDSP LSSRLLPNQP  60
QHFGWNYLQM GLGRKIDPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR GKNRSRKPVE  120
VLKSTTTPSS STTNSNASST QQAISSITKI NSTLSPLASS ETHQHHHYPQ HYGSFLYHHH  180
PPSRSSGIGL SFEDNSAPLF LDTGSCSQSN TDCRSRYVYG EKEEVDEHAF FTEPCGVMKS  240
FSASSMDDSW QLTPLTMSSS SSSSKQRSSF GLSSDYSCLQ LQSHSKQQQQ EHHQDQGCYM  300
FGAGQVVKEE PQKTVHRFFD EWPHKGREGS WLDLDDKSST TQLSISIPTS SHDFSTFSSR  360
THHDG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.278720.0cotyledon| hypocotyl| root| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G176500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-121AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547502.20.0growth-regulating factor 1 isoform X1
RefseqXP_028202879.10.0growth-regulating factor 1-like isoform X1
TrEMBLA0A445GUX50.0A0A445GUX5_GLYSO; Growth-regulating factor 4
TrEMBLI1MHE90.0I1MHE9_SOYBN; Uncharacterized protein
STRINGGLYMA15G19460.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-54growth-regulating factor 5