PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G169300.1.p | ||||||||
Common Name | GLYMA_15G169300, LOC100780875 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GATA | ||||||||
Protein Properties | Length: 316aa MW: 35380.8 Da PI: 9.587 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.5 | 2.2e-19 | 176 | 209 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk + Glyma.15G169300.1.p 176 CSDCHTTKTPLWRSGPKGPKSLCNACGIRQRKVR 209 *******************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.0E-18 | 170 | 222 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.33E-13 | 171 | 212 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.7E-16 | 174 | 208 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.585 | 174 | 206 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 8.39E-15 | 175 | 215 | No hit | No description |
Pfam | PF00320 | 4.0E-17 | 176 | 209 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 176 | 201 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MIPTYRYSVS SPMPIDLNED HTHHLFSTNH QASCSSSSLS YSILFNPDQD QGGSCSDWKS 60 KHLQSDEEAQ KIVPSSGLSE KDENKSDLKL RVWKKEDKCE NFQGEDNSTK WMPLKMRMMR 120 RLMVSDQTGS DDTEGMISNS QKIKYEEKNS PLSPLGTDDS NYNSSSNHSN ITVRVCSDCH 180 TTKTPLWRSG PKGPKSLCNA CGIRQRKVRR AIAAAATSNG TNPVEAEKSQ VKKGNTLHSK 240 GMKSKTEGAQ QMKKNRKLGA RYRKRFGAFE DLTVRLSKNF ALQQVFPQDE KEAAILLMAL 300 SYGLLHGFPT DRYIT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.11973 | 0.0 | pod |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G169300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003546455.1 | 0.0 | putative GATA transcription factor 22 | ||||
TrEMBL | A0A0B2QY83 | 0.0 | A0A0B2QY83_GLYSO; Putative GATA transcription factor 22 | ||||
TrEMBL | I1MH70 | 0.0 | I1MH70_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G18380.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1992 | 34 | 84 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 2e-31 | cytokinin-responsive gata factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G169300.1.p |
Entrez Gene | 100780875 |