PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G169300.1.p
Common NameGLYMA_15G169300, LOC100780875
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 316aa    MW: 35380.8 Da    PI: 9.587
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G169300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.52.2e-19176209134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Glyma.15G169300.1.p 176 CSDCHTTKTPLWRSGPKGPKSLCNACGIRQRKVR 209
                          *******************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.0E-18170222IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.33E-13171212No hitNo description
Gene3DG3DSA:3.30.50.106.7E-16174208IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.585174206IPR000679Zinc finger, GATA-type
CDDcd002028.39E-15175215No hitNo description
PfamPF003204.0E-17176209IPR000679Zinc finger, GATA-type
PROSITE patternPS003440176201IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MIPTYRYSVS SPMPIDLNED HTHHLFSTNH QASCSSSSLS YSILFNPDQD QGGSCSDWKS  60
KHLQSDEEAQ KIVPSSGLSE KDENKSDLKL RVWKKEDKCE NFQGEDNSTK WMPLKMRMMR  120
RLMVSDQTGS DDTEGMISNS QKIKYEEKNS PLSPLGTDDS NYNSSSNHSN ITVRVCSDCH  180
TTKTPLWRSG PKGPKSLCNA CGIRQRKVRR AIAAAATSNG TNPVEAEKSQ VKKGNTLHSK  240
GMKSKTEGAQ QMKKNRKLGA RYRKRFGAFE DLTVRLSKNF ALQQVFPQDE KEAAILLMAL  300
SYGLLHGFPT DRYIT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.119730.0pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G169300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546455.10.0putative GATA transcription factor 22
TrEMBLA0A0B2QY830.0A0A0B2QY83_GLYSO; Putative GATA transcription factor 22
TrEMBLI1MH700.0I1MH70_SOYBN; Uncharacterized protein
STRINGGLYMA15G18380.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-31cytokinin-responsive gata factor 1