PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G166200.3.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-PHD
Protein Properties Length: 718aa    MW: 81590.8 Da    PI: 8.9946
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G166200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.7e-095005421153
                          HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
             Homeobox  11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                           +e L ++F++n  p ++ +  L+k+lgL+ ++V+ WF+N R+
  Glyma.15G166200.3.p 500 AVEKLRQVFAENELPPRSVKDSLSKELGLDPEKVSKWFKNARY 542
                          5789*************************************97 PP
2PHD39.71.1e-13234289151
                          SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                  PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                          +C+ C+   +  +++++lCd +C+++fH+ Cl+++l++e++p g   w+C+ C++k
  Glyma.15G166200.3.p 234 FCANCKLheAFPDNDIILCDgTCNRAFHQRCLNPPLDTENIPPGdqGWFCKFCECK 289
                          699999954445********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.37E-14226291IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.1E-12231290IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.638232289IPR019787Zinc finger, PHD-finger
PfamPF006281.1E-10234289IPR019787Zinc finger, PHD-finger
SMARTSM002493.8E-9234287IPR001965Zinc finger, PHD-type
CDDcd155042.59E-29234286No hitNo description
PROSITE patternPS013590235286IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.602.0E-10479541IPR009057Homeodomain-like
PROSITE profilePS5007111.191487547IPR001356Homeobox domain
SMARTSM003891.2E-6489551IPR001356Homeobox domain
SuperFamilySSF466898.55E-9490552IPR009057Homeodomain-like
CDDcd000861.86E-7495542No hitNo description
PfamPF000465.9E-7500542IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MRDVNNLNNK GSGKSSYSQE QTKSKLVSSK FKTSSTKRQE KKHKVRSKSH KHRAGTSKSK  60
KTVTHSSVEA PLEDSSNKKV IIRKYRHKTD GKSSQMLSST KLEGGKNSHS SGIEGNDVDG  120
EAKIKKRKRR KKKRQRNNID VDDASRLRRR TRYLLIKMKL EQNLIDAYSG EGWKGQSREK  180
IRPEKELLRA KKQILKCKLS IRDAIHQLDS LSSVGSIEDS AIAPDGSVYH ENIFCANCKL  240
HEAFPDNDII LCDGTCNRAF HQRCLNPPLD TENIPPGDQG WFCKFCECKI EILEATNAHL  300
GTQFSLDSTW QDVFKEEAAM PDGDIALLNP EEEWPSDDPE DDDYNPERKE DNHNFDTEGA  360
DENASNDSTS CSSLLSLNGE CPPVDEGICH EYYSVNSCLD SDESGEIACG PRQRKAVDYK  420
KLYDEMYGKD APPCEQMSED EDWGPGKRKR REKESDAVNT LMTLHESENK HSDNEKNDRT  480
REGSSGIQIR RSCFRIPLDA VEKLRQVFAE NELPPRSVKD SLSKELGLDP EKVSKWFKNA  540
RYLALKTRRY QSEGERLQSF TSKITKDSIS QNEEKDELLK SKVSKITVIH SKKDGKNITG  600
KEKNKLSNIL LKKRQPKISP PLARENGNKD SMEISNDVKL KKLLKKRKRG VNIIFEGDSQ  660
AAELEFERLG KVKMKLDSMK QKLNEVQNCR AKGSNELYLN EPSIIYVPTA QLREKIE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13643KRQEKKHK
2124129KKRKRR
3124131KKRKRRKK
4125130KRKRRK
5125133KRKRRKKKR
6127133KRRKKKR
7128133RRKKKR
8130135KKKRQR
9447452RKRREK
10639647LKKLLKKRK
11641647KLLKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.397410.0leaf
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G166200.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0979340.0BT097934.1 Soybean clone JCVI-FLGm-16O4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006597799.10.0pathogenesis-related homeodomain protein isoform X3
RefseqXP_014623469.10.0pathogenesis-related homeodomain protein isoform X3
RefseqXP_014623470.10.0pathogenesis-related homeodomain protein isoform X3
SwissprotP487851e-156PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A0R0GCX50.0A0A0R0GCX5_SOYBN; Uncharacterized protein
STRINGGLYMA15G17956.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-155pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]