PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G166200.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-PHD
Protein Properties Length: 735aa    MW: 83679.1 Da    PI: 8.9191
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G166200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.7e-095175591153
                          HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
             Homeobox  11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                           +e L ++F++n  p ++ +  L+k+lgL+ ++V+ WF+N R+
  Glyma.15G166200.1.p 517 AVEKLRQVFAENELPPRSVKDSLSKELGLDPEKVSKWFKNARY 559
                          5789*************************************97 PP
2PHD39.71.1e-13251306151
                          SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                  PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                          +C+ C+   +  +++++lCd +C+++fH+ Cl+++l++e++p g   w+C+ C++k
  Glyma.15G166200.1.p 251 FCANCKLheAFPDNDIILCDgTCNRAFHQRCLNPPLDTENIPPGdqGWFCKFCECK 306
                          699999954445********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.42E-14243308IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.1E-12248307IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.638249306IPR019787Zinc finger, PHD-finger
CDDcd155042.46E-29251303No hitNo description
PfamPF006281.1E-10251306IPR019787Zinc finger, PHD-finger
SMARTSM002493.8E-9251304IPR001965Zinc finger, PHD-type
PROSITE patternPS013590252303IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.602.0E-10496558IPR009057Homeodomain-like
PROSITE profilePS5007111.191504564IPR001356Homeobox domain
SMARTSM003891.2E-6506568IPR001356Homeobox domain
SuperFamilySSF466898.98E-9507569IPR009057Homeodomain-like
CDDcd000862.07E-7512559No hitNo description
PfamPF000466.1E-7517559IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MLREQPHRHW GDTESINMRD VNNLNNKGSG KSSYSQEQTK SKLVSSKFKT SSTKRQEKKH  60
KVRSKSHKHR AGTSKSKKTV THSSVEAPLE DSSNKKVIIR KYRHKTDGKS SQMLSSTKLE  120
GGKNSHSSGI EGNDVDGEAK IKKRKRRKKK RQRNNIDVDD ASRLRRRTRY LLIKMKLEQN  180
LIDAYSGEGW KGQSREKIRP EKELLRAKKQ ILKCKLSIRD AIHQLDSLSS VGSIEDSAIA  240
PDGSVYHENI FCANCKLHEA FPDNDIILCD GTCNRAFHQR CLNPPLDTEN IPPGDQGWFC  300
KFCECKIEIL EATNAHLGTQ FSLDSTWQDV FKEEAAMPDG DIALLNPEEE WPSDDPEDDD  360
YNPERKEDNH NFDTEGADEN ASNDSTSCSS LLSLNGECPP VDEGICHEYY SVNSCLDSDE  420
SGEIACGPRQ RKAVDYKKLY DEMYGKDAPP CEQMSEDEDW GPGKRKRREK ESDAVNTLMT  480
LHESENKHSD NEKNDRTREG SSGIQIRRSC FRIPLDAVEK LRQVFAENEL PPRSVKDSLS  540
KELGLDPEKV SKWFKNARYL ALKTRRYQSE GERLQSFTSK ITKDSISQNE EKDELLKSKV  600
SKITVIHSKK DGKNITGKEK NKLSNILLKK RQPKISPPLA RENGNKDSME ISNDVKLKKL  660
LKKRKRGVNI IFEGDSQAAE LEFERLGKVK MKLDSMKQKL NEVQNCRAKG SNELYLNEPS  720
IIYVPTAQLR EKIE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15360KRQEKKHK
2141146KKRKRR
3141148KKRKRRKK
4142147KRKRRK
5142150KRKRRKKKR
6144150KRRKKKR
7145150RRKKKR
8147152KKKRQR
9464469RKRREK
10656664LKKLLKKRK
11658664KLLKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.397410.0leaf
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G166200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0979340.0BT097934.1 Soybean clone JCVI-FLGm-16O4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014623468.10.0pathogenesis-related homeodomain protein isoform X2
SwissprotP487851e-156PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A368UH090.0A0A368UH09_SOYBN; Uncharacterized protein
STRINGGLYMA15G17956.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Representative plantOGRP18301539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-155pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]