PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G143400.1.p
Common NameGLYMA_15G143400, LOC100819198
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CAMTA
Protein Properties Length: 912aa    MW: 103085 Da    PI: 7.8195
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G143400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1163.14.9e-51321473118
                 CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                          + k+rwl+++ei+aiL n++ +++  ++ + pksg+++L++rk++r+frkDG++wkkk dgktv+E+he+LKvg+ e +++yYah+++np
  Glyma.15G143400.1.p  32 EAKSRWLRPNEIHAILCNHKYFKINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKTDGKTVKEAHEHLKVGNEERIHVYYAHGQDNP 121
                          459*************************************************************************************** PP

                 CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                          tf rrcywlL+++le+ivlvhy++++
  Glyma.15G143400.1.p 122 TFVRRCYWLLDKNLEHIVLVHYRDTQ 147
                          ***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143775.6626152IPR005559CG-1 DNA-binding domain
SMARTSM010763.5E-7730147IPR005559CG-1 DNA-binding domain
PfamPF038595.2E-4632145IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.108.0E-7346448IPR013783Immunoglobulin-like fold
SuperFamilySSF812964.37E-17359446IPR014756Immunoglobulin E-set
PfamPF018332.9E-4360445IPR002909IPT domain
SuperFamilySSF484032.33E-15543656IPR020683Ankyrin repeat-containing domain
CDDcd002042.95E-13544654No hitNo description
PfamPF127966.2E-7544624IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.9E-13545657IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.637562627IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.633595627IPR002110Ankyrin repeat
SMARTSM002488.6E-5595624IPR002110Ankyrin repeat
SMARTSM00015390705727IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.778706735IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.17E-5708809IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500966.742740769IPR000048IQ motif, EF-hand binding site
SMARTSM00015150758780IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.833759788IPR000048IQ motif, EF-hand binding site
SMARTSM000151.7E-4781803IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.347782806IPR000048IQ motif, EF-hand binding site
PfamPF006121.3E-4786803IPR000048IQ motif, EF-hand binding site
SMARTSM0001511860882IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.096861890IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    Send to blast
MMSHNLTGQL VSAEIHGFHT LEDLDVSNTM EEAKSRWLRP NEIHAILCNH KYFKINVKPV  60
NLPKSGTIVL FDRKMLRNFR KDGHNWKKKT DGKTVKEAHE HLKVGNEERI HVYYAHGQDN  120
PTFVRRCYWL LDKNLEHIVL VHYRDTQELQ LQGSPATPVN SNSSSASDPA ASWIPSEDLD  180
SGVNSAYAVE LNDNLTAKSH EQRLHEINTL EWDDLVVPNV NTSTTSNGGN VPYSFQENQS  240
LLSGRFGNVS SNPSAEIPSF GNLTQPVSGS NSAPYSFPDS AILLKNSPIS SGGVDTLGTL  300
VNEGLQSQDS FGTWMNIISD TPCSIDESAL KASISSVHVP YSSLVADNLQ SSLPEQVFNL  360
TEVSPTWASS TEKTKVLVTG YFHNNYENLA KSNLLCVCGD VSVPVEIVQV GVYRCCVPPH  420
SPGLVNLYLS FDGHKPISQV VNFEYRTPIL HEPTASMEEK YNWNEFRLQM RLAHLLFASD  480
TSLNIFSSKV SPNALKEARR FSFKTSYISK SWQYLMKSID DNTIPFSKVK DSLFETALKN  540
KLKEWLLERI ILGRKSTEYD AQGQGVIHLC AMLGYSWAIS LFSWSGLSLD FRDKFGWTAL  600
HWAASYGMEK MVATLLSCGA RPNLVTDPTP QYPGGCTAAD LAYMKGCDGL AAFLSEKSLV  660
EQFNEMSLAG NISGSLETSS TDPVNAENLT EDQLYVKETL AAYRISAEAA ARIQAAFREH  720
SFKLRYKAVE IISPEEEARQ IVAAMRIQHA FRNYESKKKM TAAARIQHRF RTWKYRREFL  780
NMRHQAIKIQ AAFRGFQARK QYRKIIWSVG VLEKVILRWR LKRKGFRGLQ VNPAREETQE  840
SDSIAEEDFF RTGRKQAEER IERSVIRVQA MFRSKKAQEE YRRMKLTHNQ AKLELELEEF  900
LDSEVDMLPK T*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.230100.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G143400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547365.10.0calmodulin-binding transcription activator 5
RefseqXP_028204125.10.0calmodulin-binding transcription activator 5-like
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A445GTI50.0A0A445GTI5_GLYSO; Calmodulin-binding transcription activator 5 isoform A
TrEMBLI1MGH00.0I1MGH0_SOYBN; Uncharacterized protein
STRINGGLYMA15G15350.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42883459
Representative plantOGRP73511116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]