PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G139000.1.p
Common NameGLYMA_15G139000, LOC100812252
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 357aa    MW: 38957.9 Da    PI: 6.1288
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G139000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.92e-33186244159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK vk+s++prsYYrCtsagC vkk+vers++dp++v++tYeg+H+h+
  Glyma.15G139000.1.p 186 LDDGYKWRKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERSSDDPSIVVTTYEGQHRHP 244
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-35171246IPR003657WRKY domain
SuperFamilySSF1182901.31E-29178246IPR003657WRKY domain
PROSITE profilePS5081133.235181246IPR003657WRKY domain
SMARTSM007742.8E-39186245IPR003657WRKY domain
PfamPF031064.1E-27187244IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAEEKREEEV AHPNNSSSTT MPFSDEIPNN NNLMMTFPFQ VPPTIFDVMM MPSSSSSFID  60
LLGVQDYNAP LFDCLPGGGY RPAPSPASSN VPDSSEVLNT PAASPNLSSI SSSSNEATVN  120
NNAEQSLKPG NDQEEAEAEE EGGNGGRGDD QDQDKTKKQL KPKKKNQKKQ REPRFAFMTK  180
SEVDHLDDGY KWRKYGQKAV KNSPYPRSYY RCTSAGCGVK KRVERSSDDP SIVVTTYEGQ  240
HRHPCPASAR ASFGFVSEPS SFGYAGSFGP SHFMLPHQHH QQAQSSALMY NNSTTPPLNV  300
VSSSSTSNYM NTTSFGGFVQ DHANRHGFGH EALLRDNGLL QDIIVPTQLG MVCNAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-30176247778Probable WRKY transcription factor 4
2lex_A3e-30176247778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G139000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195681e-112EU019568.1 Glycine max WRKY26 (WRKY26) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547354.20.0probable WRKY transcription factor 48 isoform X1
RefseqXP_028203144.10.0probable WRKY transcription factor 48
SwissprotQ9FGZ42e-53WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLK7MB970.0K7MB97_SOYBN; Uncharacterized protein
STRINGGLYMA15G14860.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.11e-46WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]