PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G135600.1.p
Common NameGLYMA_15G135600, LOC100804773
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 524aa    MW: 56953.3 Da    PI: 6.4617
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G135600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.8e-31288346259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Glyma.15G135600.1.p 288 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRNDPNMLVITYTSEHNHP 346
                          699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-31282348IPR003657WRKY domain
PROSITE profilePS5081132.822282348IPR003657WRKY domain
SuperFamilySSF1182902.22E-26285348IPR003657WRKY domain
SMARTSM007741.2E-37287347IPR003657WRKY domain
PfamPF031068.5E-26289346IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MCSSIFGPII MDNYQGDLTD ILRASGGAYG STGTGTGTSS SDQLPTTSHH LHHHSSHTTL  60
SHNDHWHHQH FSSSSSSDPI TFSSSSSSSS SVLIQDPMRG ATNFGDPFSI MRDPFLQVLD  120
MPSSASAYFT GGLELEAAAT FGAAVNTNSN TATSSTTNTN TTTTTVFAAA HKMLVEHDNN  180
SMRRPCKNIF SNMIQISPNA KLPVSPYDST TTAMAPSPRP IKPPAVVSPN IMLNANTSKE  240
CLVDTTGMQI SSPRNPGLKR RKNQAKKVVC IPAPAATNSR QTGEVVPSDL WAWRKYGQKP  300
IKGSPYPRGY YRCSSSKGCS ARKQVERSRN DPNMLVITYT SEHNHPWPTQ RNALAGSTRS  360
QPSKNNNNAA SNSKNSEGSN PQKGTATRTK DEEESNNNNN SEGNVSPVMA GNSSNSVKEE  420
NMEDIERHQI EMDEGEFSDG LPYKPSLMDQ STNNQQSEDF FAELGEIEAD PLDLLFTQGF  480
GGADDQRESK SLDPFHLFDW SGDNNTNTNT SSSFEEPNYK RRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-24262349280Disease resistance protein RRS1
5w3x_D2e-24262349280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G135600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-132AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028202703.10.0probable WRKY transcription factor 35 isoform X1
TrEMBLA0A0R0G1470.0A0A0R0G147_SOYBN; Uncharacterized protein
STRINGGLYMA15G14371.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.15e-80WRKY DNA-binding protein 14