PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G129900.1.p | ||||||||
Common Name | GLYMA_15G129900, LOC100809036 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YA | ||||||||
Protein Properties | Length: 206aa MW: 22866.2 Da PI: 7.2923 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 100.5 | 1.6e-31 | 110 | 166 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+ekk +++rkpylheSRh hAlrR+Rg+gGrF Glyma.15G129900.1.p 110 EEPVFVNAKQYHGILRRRQSRAKAESEKKA-ARNRKPYLHESRHLHALRRARGCGGRF 166 69***************************9.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 7.0E-35 | 108 | 169 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.416 | 109 | 169 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 6.2E-27 | 111 | 166 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.0E-23 | 112 | 134 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 114 | 134 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.0E-23 | 143 | 166 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MTTSTRDISD NEADEQQQSE PQMQHLSANG ISHAGIGTQN VQYATPPQLG TGHAVVPPTY 60 PYPDPYYRSI FAPYDAQTYP PQPYGGNPMV HLQLMGIQQA GVPLPTDTVE EPVFVNAKQY 120 HGILRRRQSR AKAESEKKAA RNRKPYLHES RHLHALRRAR GCGGRFLNSK KDENQQDEVA 180 STDESQSNIN LNSDKNELAP SDRTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 4e-20 | 109 | 174 | 1 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G129900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003546258.1 | 1e-152 | nuclear transcription factor Y subunit A-7 isoform X1 | ||||
Refseq | XP_003546259.1 | 1e-152 | nuclear transcription factor Y subunit A-7 isoform X1 | ||||
Refseq | XP_028203931.1 | 1e-152 | nuclear transcription factor Y subunit A-7-like isoform X1 | ||||
Refseq | XP_028203932.1 | 1e-152 | nuclear transcription factor Y subunit A-7-like isoform X1 | ||||
Swissprot | Q84JP1 | 1e-66 | NFYA7_ARATH; Nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | I1MG33 | 1e-151 | I1MG33_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G13660.2 | 1e-152 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5379 | 33 | 55 | Representative plant | OGRP680 | 16 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 2e-50 | nuclear factor Y, subunit A7 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G129900.1.p |
Entrez Gene | 100809036 |
Publications ? help Back to Top | |||
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