PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.15G123100.1.p

Common Name

GLYMA_15G123100, LOC100786925

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

G2-like

Protein Properties

Length: 330aa MW: 35650 Da PI: 6.7445

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.15G123100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.8	5.8e-34	49	103	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Glyma.15G123100.1.p 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.134	46	106	IPR017930	Myb domain
SuperFamily	SSF46689	7.7E-18	47	103	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-32	48	104	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-25	49	104	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-9	51	102	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-23	136	182	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MYHSKNVPSA SLIGGNSLSH GQHIDCGGST MDPGSGGNGL SNNSNLTSKQ RLRWTHELHE 60 RFVDAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDS SSDEGKKADK 120 KETGDMLSNL DGSSGMQITE ALKLQMEVQK RLHEQLEVQR QLQLRIEAQG KYLKKIIEEQ 180 QRLSGVLSEA PGSGAVAVVP GDACQEPDNK TDPSTPDPEK AAKDRAPAKS LSIESFSSHP 240 EPMTPDSGCH VGSPAESPKG ERSAKKQRVT MDGVYSKPEM VLPHQILESS MSSYQQPNTV 300 FLGQEQFDPS LDISTKSDEE LVKIGGGNL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.5788	0.0	cotyledon\| hypocotyl\| root\| somatic embryo

Function -- GeneRIF ? help Back to Top
Overexpressing GmPHR25 increased inorganic phosphorus concentration in transgenic soybean hairy roots under normal conditions, accompanied with a significant decrease in hairy root growth.[PHR25] [PMID: 28992334]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.15G123100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095294	0.0	BT095294.1 Soybean clone JCVI-FLGm-7I11 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001350613.1	0.0	MYB-CC domain-containing transcription factor PHR25
Refseq	XP_014623428.1	0.0	MYB-CC domain-containing transcription factor PHR25 isoform X1
Refseq	XP_014623429.1	0.0	MYB-CC domain-containing transcription factor PHR25 isoform X1
Refseq	XP_028204934.1	0.0	myb family transcription factor PHL7-like isoform X1
Refseq	XP_028204935.1	0.0	myb family transcription factor PHL7-like isoform X1
Refseq	XP_028204937.1	0.0	myb family transcription factor PHL7-like isoform X1
Refseq	XP_028204939.1	0.0	myb family transcription factor PHL7-like isoform X1
Swissprot	Q9SJW0	1e-119	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A445GSP1	0.0	A0A445GSP1_GLYSO; Myb family transcription factor PHL7 isoform A
TrEMBL	I1MFV7	0.0	I1MFV7_SOYBN; Uncharacterized protein
STRING	GLYMA15G12940.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8610	33	43
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-104	G2-like family protein

Link Out ? help Back to Top
Phytozome	Glyma.15G123100.1.p
Entrez Gene	100786925

Publications ? help Back to Top
Xue YB, et al. GmPHR25, a GmPHR member up-regulated by phosphate starvation, controls phosphate homeostasis in soybean. J. Exp. Bot., 2017. 68(17): p. 4951-4967 [PMID:28992334]