PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G123000.1.p | ||||||||
Common Name | GLYMA_15G123000, LOC100786397 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | G2-like | ||||||||
Protein Properties | Length: 314aa MW: 34166.9 Da PI: 7.0557 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106 | 2.1e-33 | 42 | 96 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt++LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl Glyma.15G123000.1.p 42 KPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 96 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.569 | 39 | 99 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-32 | 39 | 97 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.27E-16 | 42 | 98 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.7E-24 | 42 | 97 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.0E-7 | 44 | 95 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.2E-15 | 137 | 182 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MYSRLIHPHD GIVTQDDLQG AASNLSHAHK GDPCLVLTAD PKPRLRWTQD LHERFVDAVT 60 QLGGASKATP KAIMRTMNVK GLTLFHLKSH LQKYRLGKQS GKDVGEGCKD GSYLLESPGA 120 DNSSPKLPTS DTNEGYEIKE ALRAQMEVQS KLHLQVEAEK HLQIRQDAER RYMAMLERAC 180 KMLADQFIGA TVIDTDSQKF QGIGSKAPRG TLVDPLGFYS MPSTEVAGVN VPEEEIPLSL 240 PPQRADCSTE SCLTSHESSG GLALEGSPGE GKRRMLGMDS MAAPLIWSEA KMRTQAINVA 300 QGNLPQGITR YGM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-18 | 42 | 98 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-18 | 42 | 98 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-18 | 42 | 98 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-18 | 42 | 98 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.55651 | 0.0 | cotyledon| leaf| meristem| root| seed coat| somatic embryo |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G123000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093650 | 0.0 | BT093650.1 Soybean clone JCVI-FLGm-24E4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001241456.1 | 0.0 | MYB-CC domain-containing transcription factor PHR24 | ||||
Refseq | XP_006597012.1 | 0.0 | MYB-CC domain-containing transcription factor PHR24 isoform X1 | ||||
Refseq | XP_028204940.1 | 0.0 | protein PHR1-LIKE 2-like isoform X1 | ||||
Swissprot | Q94A57 | 1e-63 | PHL2_ARATH; Protein PHR1-LIKE 2 | ||||
TrEMBL | A0A445GSF9 | 0.0 | A0A445GSF9_GLYSO; Protein PHR1-LIKE 2 isoform A | ||||
TrEMBL | C6T856 | 0.0 | C6T856_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G12930.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6618 | 33 | 49 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 5e-66 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G123000.1.p |
Entrez Gene | 100786397 |
Publications ? help Back to Top | |||
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