PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G088600.1.p
Common NameLOC100790650
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 27459.1 Da    PI: 9.9519
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G088600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-312473150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Glyma.15G088600.1.p 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 73
                         79***********************************************8 PP
2K-box118.55.9e-39941887100
                K-box   7 ks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                             ++ea+a+ +qqe++kL+++i++Lq+++R+++Ge+L++L+ keL++Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr
  Glyma.15G088600.1.p  94 AGsASEANAQFYQQEADKLRAQISSLQNNNRQMMGESLGPLTAKELKNLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLR 183
                          444899************************************************************************************ PP

                K-box  96 kklee 100
                          +k++e
  Glyma.15G088600.1.p 184 AKIAE 188
                          **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.871676IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-401675IPR002100Transcription factor, MADS-box
CDDcd002651.67E-431786No hitNo description
PRINTSPR004049.4E-321838IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-321888IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003199.0E-272572IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-323853IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-325374IPR002100Transcription factor, MADS-box
PfamPF014867.0E-2899186IPR002487Transcription factor, K-box
PROSITE profilePS5129715.115102192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MVFPNPSMSV SPQKKMGGGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSSRGRLY EYANNSVKAT IERYKKACSD SSGAGSASEA NAQFYQQEAD KLRAQISSLQ  120
NNNRQMMGES LGPLTAKELK NLETKLEKGI SRIRSKKNEL LFAEIEYMQK REIDLHNNNQ  180
LLRAKIAEGE RNHHNLAVLP GGSNYDSLQT SQQQFDSRGY FQVTGLQPNN QYARQDQMSL  240
QLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-201684169Myocyte-specific enhancer factor 2B
1tqe_Q3e-201684169Myocyte-specific enhancer factor 2B
1tqe_R3e-201684169Myocyte-specific enhancer factor 2B
1tqe_S3e-201684169Myocyte-specific enhancer factor 2B
6c9l_A3e-201684169Myocyte-specific enhancer factor 2B
6c9l_B3e-201684169Myocyte-specific enhancer factor 2B
6c9l_C3e-201684169Myocyte-specific enhancer factor 2B
6c9l_D3e-201684169Myocyte-specific enhancer factor 2B
6c9l_E3e-201684169Myocyte-specific enhancer factor 2B
6c9l_F3e-201684169Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flower. Preferentially expressed in stamen and carpel and weakly in petal. Undetected in leaves and roots.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G088600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3828330.0AY382833.1 Glycine max MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546055.10.0floral homeotic protein AGAMOUS isoform X2
RefseqXP_006597496.10.0floral homeotic protein AGAMOUS isoform X1
SwissprotQ408721e-130AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLA0A368UKI91e-179A0A368UKI9_SOYBN; Uncharacterized protein
STRINGGLYMA15G09500.11e-180(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-108MIKC_MADS family protein