PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G085400.1.p | ||||||||
Common Name | GLYMA_15G085400, LOC102661478 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 363aa MW: 39132.8 Da PI: 8.0574 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.3e-18 | 27 | 77 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d ++ r +lg+f+tae+Aa+a+++a+++l+g+ Glyma.15G085400.1.p 27 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDNAARALRGA 77 689******.7*********....4456*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.44E-31 | 27 | 84 | No hit | No description |
SMART | SM00380 | 3.4E-36 | 27 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.495 | 27 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-29 | 27 | 84 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-12 | 27 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-20 | 28 | 84 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.2E-7 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-7 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MSKKQNMGAV SDGNRSRKKS SSRGHHRFVG VRQRPSGRWV AEIKDSLQKV RLWLGTFDTA 60 EDAARAYDNA ARALRGANAR TNFELPESSS GGATKRGGSK FVPDCTEPFS FEDVNEPGSE 120 AEGLLGALKA KLLDGKKGKF QFQFLGNCSA PVVQSGMVSR STQNCSGKKE LLLPSSANNT 180 VLSRMNGTGT CSPVHGLMST LASSNTCAKT VVIPNHDHEL VAVASTSSGR VYSHQLCQTP 240 PVTTWPNEVA YDLPWPTQYM SQVPDNSLLA SSGAVATLST WPLSGVTEST VDMTYMDQGQ 300 SNSNKSGQMM NMVSMQLPLV GGANEGLWTL EQQQFVQCDQ NNSWFSFNGS WDPLLYVPSE 360 LT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 25 | 83 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G085400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006597486.1 | 0.0 | uncharacterized protein LOC102661478 | ||||
Refseq | XP_028203660.1 | 0.0 | uncharacterized protein LOC114387651 | ||||
TrEMBL | A0A445GR29 | 0.0 | A0A445GR29_GLYSO; Ethylene-responsive transcription factor ERN1 | ||||
TrEMBL | I1MEV2 | 0.0 | I1MEV2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G09190.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11333 | 30 | 35 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-13 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G085400.1.p |
Entrez Gene | 102661478 |