PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G078300.1.p | ||||||||
Common Name | GLYMA_15G078300, Glyma15g08480.4, LOC100809389 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 323aa MW: 36190.7 Da PI: 7.0242 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.8 | 2.7e-33 | 61 | 203 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 lp+G++F+P+d+e++ e+L++kv+++ ++l+ +++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ Glyma.15G078300.1.p 61 LPAGVKFDPNDQEIL-EHLEAKVASDACKLHPlidefipTLEGEnGICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVHtdd 148 799***********9.99********95553333333222333336**********.555666777******************744456 PP NAM 80 ...sgyWkatgkdkevlsk.kgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v+++ +g+++g kk+Lv+y gr++k+ekt+Wvmh+y+l Glyma.15G078300.1.p 149 egsETRWHKTGKTRAVFAAaGGAVKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 203 555788***********9978889**********6658***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-36 | 55 | 222 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.126 | 61 | 222 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-15 | 62 | 203 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MTWCNDSDED RVIESTTPTI TITPNTDGIK LTEEIRTITC PSCGHNIEFK DQGGIHDLPG 60 LPAGVKFDPN DQEILEHLEA KVASDACKLH PLIDEFIPTL EGENGICYTH PEKLPGVSKD 120 GQIRHFFHRP SKAYTTGTRK RRKVHTDDEG SETRWHKTGK TRAVFAAAGG AVKGFKKILV 180 LYTNYGRQKK PEKTNWVMHQ YHLGSTEEEK DGELVVSKVF YQTQPRQCGN PIIIKDSYEK 240 MLNDGSGQDN INISLIPKTT ATLLDCYTAP YIDYDHVHVS HNRESSSQLI IPSSVVQVDG 300 SYIRLTMDAK KARFESNTGK RF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.18446 | 0.0 | flower| hypocotyl| meristem| root| somatic embryo| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G078300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031220 | 0.0 | KT031220.1 Glycine max clone HN_CCL_58 NAC transcription factor (Glyma15g08480.4) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003546008.1 | 0.0 | NAC domain-containing protein 73 | ||||
Refseq | XP_028205153.1 | 0.0 | NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 1e-120 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A0B2QGN4 | 0.0 | A0A0B2QGN4_GLYSO; NAC domain-containing protein 73 isoform A | ||||
TrEMBL | I1MEN3 | 0.0 | I1MEN3_SOYBN; NAC transcription factor | ||||
STRING | GLYMA15G08480.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 | Representative plant | OGRP525 | 15 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-112 | NAC domain containing protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G078300.1.p |
Entrez Gene | 100809389 |
Publications ? help Back to Top | |||
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