PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G070300.1.p
Common NameGLYMA_15G070300, LOC100806369
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 355aa    MW: 39585.1 Da    PI: 8.7131
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G070300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.74.7e-53161441128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrF Ptdeelvv+yLk+k+++ +l++ ++i+evd+yk++Pw+Lp+k++ +++ewyfFs+rd+ky++g+r+nra++sgyWkatg+dk
  Glyma.15G070300.1.p  16 LPPGFRFYPTDEELVVHYLKRKADSVPLPV-SIIAEVDLYKFDPWELPSKATFGDQEWYFFSPRDRKYPNGSRPNRAASSGYWKATGTDK 104
                          79****************************.89***************988899************************************ PP

                  NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++l++  ++++vg+kk+Lvfy g+ pkg+kt+W+mheyrl
  Glyma.15G070300.1.p 105 PILAShgHHHKVGVKKSLVFYGGKPPKGVKTNWIMHEYRL 144
                          ***99777778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-6411184IPR003441NAC domain
PROSITE profilePS5100561.13316184IPR003441NAC domain
PfamPF023651.1E-2717144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDSSSSGSQL SQHPQLPPGF RFYPTDEELV VHYLKRKADS VPLPVSIIAE VDLYKFDPWE  60
LPSKATFGDQ EWYFFSPRDR KYPNGSRPNR AASSGYWKAT GTDKPILASH GHHHKVGVKK  120
SLVFYGGKPP KGVKTNWIMH EYRLADSNSN SSSKPPSMAS DHAQSCKKNS LRLDDWVLCR  180
IYKKSNSTNL PRLPLVEQNK ELSMLPMRST LSMANNNTSQ DSKPTSSIST SYGPLGVEND  240
DNLFDGILGV DHQSMQHDVS DSQQVSSKGN FPMKRELSSQ YFWNDTGSSS SSRRFHCDLN  300
YAGSSTVEED NSFVSLLSHL SQNTTSFHPN ALLGPIGNGV LRQQFQLPSM NWNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-731618920173NAC domain-containing protein 19
3swm_B2e-731618920173NAC domain-containing protein 19
3swm_C2e-731618920173NAC domain-containing protein 19
3swm_D2e-731618920173NAC domain-containing protein 19
3swp_A2e-731618920173NAC domain-containing protein 19
3swp_B2e-731618920173NAC domain-containing protein 19
3swp_C2e-731618920173NAC domain-containing protein 19
3swp_D2e-731618920173NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}.
UniprotTISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G070300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150382e-94AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547137.10.0NAC transcription factor 25
RefseqXP_028203388.10.0NAC transcription factor 25-like
SwissprotQ8GY421e-108NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A445GQH00.0A0A445GQH0_GLYSO; NAC transcription factor 25
TrEMBLI1MEE00.0I1MEE0_SOYBN; Uncharacterized protein
STRINGGLYMA15G07620.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.13e-89NAC domain containing protein 25