PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G064500.2.p
Common NameGLYMA_15G064500, LOC100794682
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 459aa    MW: 49996.6 Da    PI: 5.0282
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G064500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.81.3e-053493861254
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Glyma.15G064500.2.p 349 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 386
                          677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.973337386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-10347392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.07E-5347390No hitNo description
Gene3DG3DSA:4.10.280.102.6E-8351391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MAEEFQAAIC GESWWNIINP TRSVFPLMPS TCSVAAADAG NYSTWQSTTD FVDLKGTRSC  60
AEETDINLVS SDTSLSFLDA EKPHQSGTGS ILIDSTLQMM GFGMSSSTSP NWSQSLLGSS  120
FDSVLQEETG IGGGGSSNDS QIQKDWSPKN FSSDGGSEQV STVDAFKPMN QEFSLDQQSL  180
NSVVTSTDGS LSGGNFPVVS ASYGYPSTLI QSLYEHQPQP QNSLFTNPSM SYGTCSNELS  240
PTWSKVSSFL KPSMPKQQLR GLHFSNNTTP FWNSSAEALN DIRAGVFASS QAQYQTPKFE  300
EKPNCPHTLL KKLKREESPD AAKKNSPEPA AFKRQRIETP SPLPTFKVRK EKLGDRITAL  360
QQLVSPFGKT DTASVLHEAI EYIKFLHDQV LRTPYMKNNG APIQHQQDCD NLKDSEGPKQ  420
DLRSRGLCLV PVSSTFPVAN ETIVDFWTPT FGGALIGK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G064500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311200.0KT031120.1 Glycine max clone HN_CCL_146 bHLH transcription factor (Glyma13g32320.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006597381.10.0transcription factor bHLH112 isoform X2
RefseqXP_028202532.10.0transcription factor bHLH112-like isoform X2
TrEMBLI1ME730.0I1ME73_SOYBN; Uncharacterized protein
STRINGGLYMA15G07010.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-56bHLH family protein