PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G064500.1.p | ||||||||
Common Name | GLYMA_15G064500, LOC100794682 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 461aa MW: 50182.8 Da PI: 5.0282 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.8 | 1.3e-05 | 349 | 386 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Glyma.15G064500.1.p 349 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 386 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.973 | 337 | 386 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.76E-6 | 347 | 391 | No hit | No description |
SuperFamily | SSF47459 | 2.22E-11 | 347 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.6E-9 | 351 | 394 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MAEEFQAAIC GESWWNIINP TRSVFPLMPS TCSVAAADAG NYSTWQSTTD FVDLKGTRSC 60 AEETDINLVS SDTSLSFLDA EKPHQSGTGS ILIDSTLQMM GFGMSSSTSP NWSQSLLGSS 120 FDSVLQEETG IGGGGSSNDS QIQKDWSPKN FSSDGGSEQV STVDAFKPMN QEFSLDQQSL 180 NSVVTSTDGS LSGGNFPVVS ASYGYPSTLI QSLYEHQPQP QNSLFTNPSM SYGTCSNELS 240 PTWSKVSSFL KPSMPKQQLR GLHFSNNTTP FWNSSAEALN DIRAGVFASS QAQYQTPKFE 300 EKPNCPHTLL KKLKREESPD AAKKNSPEPA AFKRQRIETP SPLPTFKVRK EKLGDRITAL 360 QQLVSPFGKT DTASVLHEAI EYIKFLHDQV SVLRTPYMKN NGAPIQHQQD CDNLKDSEGP 420 KQDLRSRGLC LVPVSSTFPV ANETIVDFWT PTFGGALIGK * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G064500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031120 | 0.0 | KT031120.1 Glycine max clone HN_CCL_146 bHLH transcription factor (Glyma13g32320.2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006597380.1 | 0.0 | transcription factor bHLH112 isoform X1 | ||||
Refseq | XP_028202531.1 | 0.0 | transcription factor bHLH112-like isoform X1 | ||||
TrEMBL | A0A445GQ99 | 0.0 | A0A445GQ99_GLYSO; Transcription factor bHLH123 isoform A | ||||
TrEMBL | K7M9Y5 | 0.0 | K7M9Y5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G07010.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1118 | 33 | 106 | Representative plant | OGRP3135 | 11 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 6e-59 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G064500.1.p |
Entrez Gene | 100794682 |