PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G063000.1.p | ||||||||
Common Name | GLYMA_15G063000, LOC100790993 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 213aa MW: 24052.4 Da PI: 8.4391 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.4 | 1.9e-11 | 66 | 112 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N++f eL ++l ++ + K++Ka iL Av+ +++L Glyma.15G063000.1.p 66 KACREKMRRDRLNDRFMELGSILDPR---KPLKMDKAVILSDAVRVVSQL 112 678***********************...99****************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.316 | 61 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.2E-13 | 64 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.55E-8 | 65 | 117 | No hit | No description |
SuperFamily | SSF47459 | 2.36E-13 | 65 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.2E-9 | 66 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-9 | 67 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MSNSNWVLDY DYLDNIPLTT LEPPNFSWSS SSPPPTLSVE LDDSFGILDG LKENRSRKRL 60 RPSDSKACRE KMRRDRLNDR FMELGSILDP RKPLKMDKAV ILSDAVRVVS QLREEAQKLR 120 ESTENLQEKI NALKDEKNEL RDEKQRLKVE KENLEQKVKA LSSQPSFLAA AGQVVGSKLV 180 PFMGYPGVAM WQFLSPAAVD TSQDHVLRPP VA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.12688 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed throughout development, mostly in vasculatures. {ECO:0000269|PubMed:17028341}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G063000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 2e-49 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003547112.1 | 1e-153 | transcription factor ILR3 | ||||
Refseq | XP_028203366.1 | 1e-153 | transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 2e-75 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A445GQ19 | 1e-152 | A0A445GQ19_GLYSO; Transcription factor ILR3 isoform A | ||||
TrEMBL | I1ME58 | 1e-152 | I1ME58_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G06860.1 | 1e-152 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1602 | 34 | 86 | Representative plant | OGRP755 | 17 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 6e-74 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G063000.1.p |
Entrez Gene | 100790993 |