PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G053600.1.p
Common NameGLYMA_15G053600, LOC100818124
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CAMTA
Protein Properties Length: 1089aa    MW: 122478 Da    PI: 5.9827
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G053600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.52.1e-56221364118
                 CG-1   4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                           ++rwl++ ei++iL n++ +++t+e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++
  Glyma.15G053600.1.p  22 AQHRWLRPAEICEILRNYRMFHITSEPHNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENEN 111
                          49**************************************************************************************** PP

                 CG-1  94 fqrrcywlLeeelekivlvhylevk 118
                          fqrr+yw+Le ++ +iv+vhylevk
  Glyma.15G053600.1.p 112 FQRRSYWMLEPDMMHIVFVHYLEVK 136
                          **********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.0515141IPR005559CG-1 DNA-binding domain
SMARTSM010768.9E-8118136IPR005559CG-1 DNA-binding domain
PfamPF038591.9E-5021135IPR005559CG-1 DNA-binding domain
SuperFamilySSF812962.24E-15503588IPR014756Immunoglobulin E-set
PfamPF018331.5E-4503578IPR002909IPT domain
PROSITE profilePS5029720.473686797IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.8E-20687798IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.51E-21690797IPR020683Ankyrin repeat-containing domain
CDDcd002045.45E-17692795No hitNo description
PROSITE profilePS500889.084703735IPR002110Ankyrin repeat
SMARTSM002481100703732IPR002110Ankyrin repeat
PfamPF127968.5E-8708798IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.606736768IPR002110Ankyrin repeat
SMARTSM002483.5E-4736765IPR002110Ankyrin repeat
SMARTSM002481300775804IPR002110Ankyrin repeat
SMARTSM000150.27911933IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525405.31E-7912962IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500968.407912941IPR000048IQ motif, EF-hand binding site
PfamPF006120.0032914932IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0056934956IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.212935959IPR000048IQ motif, EF-hand binding site
PfamPF006120.0018937956IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1089 aa     Download sequence    Send to blast
MAEGASYGLR RPLDIQQLQF EAQHRWLRPA EICEILRNYR MFHITSEPHN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDVLH CYYAHGEENE NFQRRSYWML  120
EPDMMHIVFV HYLEVKGNKN IVVNNEGDEV PTDSQKVTSP SSSLPTHHSC VSSLSTDSVS  180
PTTSLMSLHE DADSEDIHHA SSGLHPLHES QHSGNSPLTE KIGAGSNSSY LMHPFSGDNE  240
QSSISGTDYV PVVHGDKFRG NDTAYTDGQK PHGMAPWGTV LQSTAKLHND PSLASFPSIL  300
PSSMGDVLEQ EHTIFGDLLM SKSGLTEEAE SSQSLQSNWQ IPFEDNSGGM PMLTQTQSFG  360
LQFRSDYGTG LLGNETRNAS SEIAPILYSF HGEPKEQPMQ QNYPQELEDG QSQHALKSNS  420
ANKVPDEETI NYGLTVKSTL LDRDESLKKV DSFSRWITKE LGEVADLNMQ SSPGISWSTD  480
ECQHVIDDTS LSPSLSQDQL FSINDFSPKW AYAESEIEVL IIGSFLKSQP EVTTCNWSCM  540
FGEVEVPAEV LADGILCCQA PCHKVGRVPF YVTCSNRLAC SEVREFDFRE GFARNVDFAD  600
FYISSTEMLR HLRLEDFLSL KPVDPSNHSF EGDMEKRNLI FKLISLREEE DYSIKDEVTR  660
ELDISQHMVK EHLFHRQFKE KLYSWLLHKV TENGKGPNVL DEDGQGVLHL AAFLGYDWAI  720
NPIISAGVNI NFRDVNGWTA LHWAASCGRE RTVAVLVSMG ADCGALTDPS PAFPSGRTAA  780
DLASSYGHKG ISGFLAESSL THHLETLTMD DQKGGQQEIS GMKVVQTVSE RSATPVHYCD  840
IPDAICLKDS LTAVRNATQA ADRIHQVYRM QSFQRKQLTQ YEGDDELGLS DQQALSLLAS  900
RACKSGQGDG LANAAAVQIQ KKFRGWKKRK EFLMIRQRVV KIQAHVRGHQ IRKQYKPIIW  960
SVGILEKVIL RWRRKGSGLR GFRPNAINKV PNQQNDSLKE DDYDYLKEGR KQKEEKIQKA  1020
LSRVKSMVQY PEARAQYRRL LNVVEDFRQT KASNKGLINS EETVDGVEDL IDIDMLLDDD  1080
NFIPIAFD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.218210.0cotyledon| hypocotyl| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G053600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547081.20.0calmodulin-binding transcription activator 2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A0R0FWQ00.0A0A0R0FWQ0_SOYBN; Uncharacterized protein
STRINGGLYMA15G05900.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74062642
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]