PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G044400.3.p
Common NameGLYMA_15G044400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 374aa    MW: 41795.8 Da    PI: 8.8169
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G044400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.3e-17136185155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Glyma.15G044400.3.p 136 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHIAARAYDRAAIKFRG 185
                          78*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-8136185IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-15136193IPR016177DNA-binding domain
PROSITE profilePS5103217.583137193IPR001471AP2/ERF domain
SMARTSM003803.0E-31137199IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-17137193IPR001471AP2/ERF domain
CDDcd000184.45E-24137193No hitNo description
CDDcd000182.27E-12228273No hitNo description
SuperFamilySSF541717.85E-6228273IPR016177DNA-binding domain
SMARTSM003801.1E-9229277IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MLDLNLNAES TQNNESLVLL DKFPEASLGT SNSSVVNAEG SSNEDSCSTR AGDVFAFSFG  60
ILKVEGANEV VATATKELFP VSSENWQGQS STSSSQARKN LMDLPLDHQN GEVKVVQVQP  120
QPQVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH IAARAYDRAA  180
IKFRGLDADI NFDLVDYEED LKQMKNLSKQ EFVHILRRHS TGFSRGSSKY RGVTLHKCGR  240
WEARMGQFLG KKAYDKAAIK CNRREAVTNF EPSIYESEMK PEAINEGGSH DLDLNLGIAT  300
PGHGPKENRG HLQFQSIPYN MHPGRSSRME TNVNSVIGDP SLKRLVVTEE RPSVYSTFFP  360
NLNKEERLLL ILT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.196380.0cotyledon| hypocotyl| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G044400.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1434100.0BT143410.1 Lotus japonicus clone JCVI-FLLj-21N13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028204828.10.0ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9SK031e-108RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLI1MDL90.0I1MDL9_SOYBN; Uncharacterized protein
STRINGGLYMA15G04930.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.21e-105related to AP2.7