PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G037100.1.p
Common NameGLYMA_15G037100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 689aa    MW: 77098.1 Da    PI: 5.6866
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G037100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3451.2e-1053526871336
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL+ cA+avss+d++ a++lL+++++++s  gd+ qRla+y+++AL+arl++  ++++ ++   + ++ ++++ l+a++++  ++P+
  Glyma.15G037100.1.p 352 LRTLLVLCAQAVSSSDNRTANELLKQIRQHSSALGDASQRLAHYVANALEARLVG--DGTATQIFYMSYKKFTTTDFLKAYQVLISACPF 439
                          5789**************************************************9..555544544444445699*************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                           kf+h+ aN++I++ ++g+e++HiiDf+i +G+QWp L++ L+ R++gpp+lRiTg++ p++g   +e++eetg rLak++++++vpfe+
  Glyma.15G037100.1.p 440 KKFAHFFANKMIMKTADGAETLHIIDFGILYGFQWPILIKFLSGRRGGPPKLRITGIEYPQPGfrPTERIEETGCRLAKYCKRFNVPFEY 529
                          **************************************************************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          ++++++++e++++e+L+++++E+laVn+ ++ ++lldes +++s+r++v++l+++++P+++v++  +  +n++ Fl+rf eal +ys+++
  Glyma.15G037100.1.p 530 KAIASRNWETIQIEDLKIERNEVLAVNCLVRFKNLLDESIEVNSPRKAVMNLIRKMKPDIFVHCVVNGTYNAPFFLTRFREALFHYSSMY 619
                          **9999************************************************************************************ PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                          d++++ ++re+e+r ++Ere+lgrei+nvvace  er+er et+++W++r ++aGFk++pl+++++++
  Glyma.15G037100.1.p 620 DMFDTLVSRENEWRLMLEREFLGREIMNVVACEALERVERPETYKQWQARNTRAGFKQLPLDKEIMTK 687
                          ***************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.879326688IPR005202Transcription factor GRAS
PfamPF035144.2E-103352687IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MDPNFIISGN DFDESKQWDL NGHYTNLLND PLSDVGPLGF SHNSILNSEP FVSSSASAAA  60
ASSSTATVAD PSPEEDTDFS ETFKFISQIL LEENFEQKPC MCYDPLTLQH TEKSFYEALE  120
LEPSLLLSPN QHPLESPDGN SSNSTTDSAN SHDLKPSSPN TPASDALHSS SHAPSLVVPP  180
HALTKINDGT VDLDSSVTKL LAENIFSDAD SMLQFKRGLE EASKFLPQGP QLFTGLESPT  240
VSSEPKGRGV ALKMENSFGV KNRKNHARQD DEEERSNKQS AVSAVCVEEE SEISEIFDRV  300
LLSVENVPLC AENNGSVAVG DSNTKLIEKS SLSDGGKVRS KRQGRKKETV DLRTLLVLCA  360
QAVSSSDNRT ANELLKQIRQ HSSALGDASQ RLAHYVANAL EARLVGDGTA TQIFYMSYKK  420
FTTTDFLKAY QVLISACPFK KFAHFFANKM IMKTADGAET LHIIDFGILY GFQWPILIKF  480
LSGRRGGPPK LRITGIEYPQ PGFRPTERIE ETGCRLAKYC KRFNVPFEYK AIASRNWETI  540
QIEDLKIERN EVLAVNCLVR FKNLLDESIE VNSPRKAVMN LIRKMKPDIF VHCVVNGTYN  600
APFFLTRFRE ALFHYSSMYD MFDTLVSREN EWRLMLEREF LGREIMNVVA CEALERVERP  660
ETYKQWQARN TRAGFKQLPL DKEIMTKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-443566808328GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.270380.0leaf| vegetative bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G037100.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025981534.10.0LOW QUALITY PROTEIN: uncharacterized protein LOC100779806
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A0R0FVT70.0A0A0R0FVT7_SOYBN; Uncharacterized protein
STRINGGLYMA15G04173.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]