PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.15G030200.1.p

Common Name

GLYMA_15G030200, LOC100810283

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 274aa MW: 31475.6 Da PI: 6.4387

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.15G030200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.6	6.7e-26	91	181	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+r+++ +++++ + + tr gC+a++++ ++++gkw+vtk+++eH+H+ Glyma.15G030200.1.p 91 EFYIAYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYLHRKDR-VlpPPPATREGCQAMIRLALRDRGKWVVTKFVKEHTHK 179 6****************************************99883333.2448899***************************** PP FAR1 89 la 90 l+ Glyma.15G030200.1.p 180 LM 181 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.0E-23	91	181	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MQIAHLDCDL CCRAMDHQSG QGFDSDDSDL DMQAEISDKH EKVDEFSKNL EICGGEDEMF 60 VEQPVADIST DIEAVEPFIG MEFNSREEAR EFYIAYGRRI GFTVRIHHNR RSRVNNQVIG 120 QDFVCSKEGF RAKKYLHRKD RVLPPPPATR EGCQAMIRLA LRDRGKWVVT KFVKEHTHKL 180 MSPSKVPCRG SGKHLVSEDE KDKRIRELSL ELYNERQKCK RRCAAYEEQL NVILNDLEKH 240 TEHISKKVAA VVRSIREIEE EKSDSDGGQL EPS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.19471	0.0	cotyledon\| leaf\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.15G030200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014622881.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBL	A0A0R0G5C4	0.0	A0A0R0G5C4_SOYBN; Uncharacterized protein
STRING	GLYMA15G03470.3	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8861	30	44
Representative plant	OGRP8956	5	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-42	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Glyma.15G030200.1.p
Entrez Gene	100810283