PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G029100.1.p
Common NameGLYMA_15G029100, LOC100786738
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 421aa    MW: 45789.7 Da    PI: 6.3966
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G029100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1315.4e-10229287563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+     l se+
  Glyma.15G029100.1.p 229 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLNSEN 287
                          9**********************************************999988888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-15225289IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.001227290IPR004827Basic-leucine zipper domain
PfamPF001705.1E-9229287IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-10229280No hitNo description
Gene3DG3DSA:1.20.5.1701.9E-10229284No hitNo description
CDDcd147039.64E-26230279No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MDKDKSLGLP PPSGRYSGYS STGSVFNVKS EPSPSSSTTL YPPLAPGTTS SESSHFGHGL  60
STDSSGFSHD ISRMPDNPPR NRGHRRAHSE ILTLPDDISF DSDLGVVGGG DGPSFSDDAE  120
EDLLSMYLDM DKFNSSSATS TFQMVEPSNA VGASASTPAS GAPTSSTENV VIGTNERPRV  180
RHQHSQSMDG STTIKPEMLV SGSEDMSAAD SKKAMSAAKL AELALIDPKR AKRIWANRQS  240
AARSKERKMR YIAELERKVQ TLQTEATSLS AQLTLLQRDT NGLNSENNEL KLRLQTMEQQ  300
VHLQDALNDA LKEEIQHLKI LTGQAMPPNG GPMMNFASFG GGQQFYPNNH AMHTLLAAQQ  360
FQQLQIHPQK QQQHQFQQLQ QQQREQHQQS IDLKMREATP TPCPKDNASS DVNPSGAKDC  420
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.335620.0cotyledon| hypocotyl| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G029100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-150AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006597221.10.0probable transcription factor PosF21
SwissprotQ040881e-153POF21_ARATH; Probable transcription factor PosF21
TrEMBLK7M9870.0K7M987_SOYBN; Uncharacterized protein
STRINGGLYMA15G03350.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55173249
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-128bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]