PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.15G027900.1.p

Common Name

GLYMA_15G027900, LOC100804426

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 974aa MW: 107384 Da PI: 6.1384

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.15G027900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.2	1.9e-29	602	652	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Glyma.15G027900.1.p 602 EKNVSLSVLQQYFSGSLKDAAKKIGVCPTTLKRICRQHGIPRWPSRKINKV 652 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.291	586	672	IPR003035	RWP-RK domain
Pfam	PF02042	3.7E-26	604	652	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.67E-21	870	958	No hit	No description
PROSITE profile	PS51745	20.772	873	955	IPR000270	PB1 domain
SMART	SM00666	3.4E-21	873	955	IPR000270	PB1 domain
CDD	cd06407	6.35E-31	874	954	No hit	No description
Gene3D	G3DSA:3.10.20.240	7.9E-22	874	955	No hit	No description
Pfam	PF00564	2.6E-16	876	954	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 974 aa Download sequence Send to blast
MEYPFSPKES VIGDWQSSGA QLEGSASLDG RMSNSIPEDM PNSFSELMNF DTYAGLCNSP 60 SITDQILAND LPSFASLSYP LPDGFNLVQQ YSGQYCMSGV GRNNNDMESS PIYGEKVVCQ 120 QMDTLLGCLN DTNEANNLNS KLKMNSSSQH LNNFDTGNYM MSRSPGLSLD ERMLRALSFF 180 KESAGGGILA QVWVPIKHGD QFILSTSDQP YLLDQMLAGY REVSRTFTFS TEGKSGCFLG 240 LPGRVFTSKV PEWTSNVGYY SMSEYLRFEH AINHKVRGSI AIPIFDLHSE FPCCAVLELV 300 TTKEKPDFDR ELEIVRHALQ LVNLRTVKTL RCLPQSLSNN KKATLTEIVD VLRSVCHAHR 360 LPLALTWIPC GYTECSRGEA SRIRIKGGHS TSSEKSVLCL EESACYITDR AMAGFIRACM 420 EHHLEEGKGI AGKALQSNHP FFYPDVKTYD ISEYPLVHHA RKYNLNAAVA IRLRSTYTND 480 DDYILEFFLP VNMRGSSEQQ LLLDNLSGTM QRICSSLRTV SETELSGIES SPVGLGKKNA 540 PSFFPLSSRN SDIPLINGDC DSVQKMSLKA TTNLKDNEIE PSPNQERNGS KRQVQKNRST 600 SEKNVSLSVL QQYFSGSLKD AAKKIGVCPT TLKRICRQHG IPRWPSRKIN KVNRSLKKIQ 660 TVLDSVQGME GGLKFDPSMG AFVAGGSIIQ EIDAPKSTIK DPVPVTQDAF SVPPAPCSEG 720 ENFSIKLEGK LKKTNVSSVD YSEDSKSMAI NDGSCQMASL CTKVQDCPEQ ACLGSVLAKE 780 HDKRILNKGG LSVEKFKHNI VGQSSKSLIA DEMDIGVDGD DGVVERNHPT SSSLTDSSNG 840 SGSMMHSSSS GSRSFENQDQ SKVKSTIIDC GSKLIVKATY REDTIRFKFD PSEGCFRLYE 900 EVAARFKLQN GLFQLKYLDD EEEWVMLVND ADLQECIEIL DDIGTRSVRF LVRDMPSVLS 960 SSGSSNSYLG GSS*

Sequence ? help Back to Top

Protein Sequence Length: 974 aa Download sequence Send to blast

MEYPFSPKES VIGDWQSSGA QLEGSASLDG RMSNSIPEDM PNSFSELMNF DTYAGLCNSP  60
SITDQILAND LPSFASLSYP LPDGFNLVQQ YSGQYCMSGV GRNNNDMESS PIYGEKVVCQ  120
QMDTLLGCLN DTNEANNLNS KLKMNSSSQH LNNFDTGNYM MSRSPGLSLD ERMLRALSFF  180
KESAGGGILA QVWVPIKHGD QFILSTSDQP YLLDQMLAGY REVSRTFTFS TEGKSGCFLG  240
LPGRVFTSKV PEWTSNVGYY SMSEYLRFEH AINHKVRGSI AIPIFDLHSE FPCCAVLELV  300
TTKEKPDFDR ELEIVRHALQ LVNLRTVKTL RCLPQSLSNN KKATLTEIVD VLRSVCHAHR  360
LPLALTWIPC GYTECSRGEA SRIRIKGGHS TSSEKSVLCL EESACYITDR AMAGFIRACM  420
EHHLEEGKGI AGKALQSNHP FFYPDVKTYD ISEYPLVHHA RKYNLNAAVA IRLRSTYTND  480
DDYILEFFLP VNMRGSSEQQ LLLDNLSGTM QRICSSLRTV SETELSGIES SPVGLGKKNA  540
PSFFPLSSRN SDIPLINGDC DSVQKMSLKA TTNLKDNEIE PSPNQERNGS KRQVQKNRST  600
SEKNVSLSVL QQYFSGSLKD AAKKIGVCPT TLKRICRQHG IPRWPSRKIN KVNRSLKKIQ  660
TVLDSVQGME GGLKFDPSMG AFVAGGSIIQ EIDAPKSTIK DPVPVTQDAF SVPPAPCSEG  720
ENFSIKLEGK LKKTNVSSVD YSEDSKSMAI NDGSCQMASL CTKVQDCPEQ ACLGSVLAKE  780
HDKRILNKGG LSVEKFKHNI VGQSSKSLIA DEMDIGVDGD DGVVERNHPT SSSLTDSSNG  840
SGSMMHSSSS GSRSFENQDQ SKVKSTIIDC GSKLIVKATY REDTIRFKFD PSEGCFRLYE  900
EVAARFKLQN GLFQLKYLDD EEEWVMLVND ADLQECIEIL DDIGTRSVRF LVRDMPSVLS  960
SSGSSNSYLG GSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.15G027900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235312	0.0	AC235312.1 Glycine max strain Williams 82 clone GM_WBb0071J06, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003546980.1	0.0	protein NLP8
Refseq	XP_006597207.1	0.0	protein NLP8
Refseq	XP_006597208.1	0.0	protein NLP8
Refseq	XP_014623508.1	0.0	protein NLP8
Refseq	XP_014623509.1	0.0	protein NLP8
Refseq	XP_028203382.1	0.0	protein NLP8-like
Refseq	XP_028203383.1	0.0	protein NLP8-like
Refseq	XP_028203385.1	0.0	protein NLP8-like
Refseq	XP_028203386.1	0.0	protein NLP8-like
Refseq	XP_028203387.1	0.0	protein NLP8-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A445GN68	0.0	A0A445GN68_GLYSO; Protein NLP8 isoform A
TrEMBL	K7M979	0.0	K7M979_SOYBN; Uncharacterized protein
STRING	GLYMA15G03225.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Glyma.15G027900.1.p
Entrez Gene	100804426

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]