PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G027400.9.p | ||||||||
Common Name | GLYMA_15G027400, LOC100803893 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YA | ||||||||
Protein Properties | Length: 255aa MW: 28590.1 Da PI: 9.4298 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 98.5 | 6.8e-31 | 134 | 190 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVN+KQy++Il+RRq Rakle+ +k +k rkpylheSRh+hAl+R+Rg gGrF Glyma.15G027400.9.p 134 EEPIYVNSKQYHAILRRRQYRAKLEALNKP-IKDRKPYLHESRHQHALKRARGAGGRF 190 69***************************9.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.1E-34 | 132 | 193 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.164 | 133 | 193 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 7.2E-26 | 135 | 190 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 6.8E-24 | 136 | 158 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 138 | 158 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 6.8E-24 | 167 | 190 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MSRSLSSKVD VLPQQCHNSK TFNFQFQEQD ASSTKSTDQS YPEVGQISVQ HSSTDSTLIR 60 NEGKSMGCVI RSFMGSQDFP FPPPLLDHRP ILAHIACHYA DPCYSGLVAA AYSPQSKPVE 120 TAPVRIPLQL DFAEEPIYVN SKQYHAILRR RQYRAKLEAL NKPIKDRKPY LHESRHQHAL 180 KRARGAGGRF LNTKKQLQSN HTPGNIAESK MHHIENYRDG ADVSYAFNSD ARNMQNDAAD 240 KGGGTTQQPL FVYM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 6e-21 | 134 | 196 | 2 | 64 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G027400.9.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235312 | 1e-143 | AC235312.1 Glycine max strain Williams 82 clone GM_WBb0071J06, complete sequence. | |||
GenBank | EU028314 | 1e-143 | EU028314.1 Glycine max clone BAC gmw1-6b18 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006597203.1 | 0.0 | nuclear transcription factor Y subunit A-3 isoform X2 | ||||
Swissprot | Q93ZH2 | 5e-42 | NFYA3_ARATH; Nuclear transcription factor Y subunit A-3 | ||||
TrEMBL | A0A0R0G3B4 | 0.0 | A0A0R0G3B4_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A0R0G469 | 0.0 | A0A0R0G469_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G03175.1 | 1e-158 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 2e-44 | nuclear factor Y, subunit A3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G027400.9.p |
Entrez Gene | 100803893 |
Publications ? help Back to Top | |||
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