PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G027400.3.p
Common NameGLYMA_15G027400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YA
Protein Properties Length: 268aa    MW: 30121.8 Da    PI: 8.9168
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G027400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.47.4e-31147203158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep+YVN+KQy++Il+RRq Rakle+ +k  +k rkpylheSRh+hAl+R+Rg gGrF
  Glyma.15G027400.3.p 147 EEPIYVNSKQYHAILRRRQYRAKLEALNKP-IKDRKPYLHESRHQHALKRARGAGGRF 203
                          69***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.1E-34145206IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.164146206IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.8E-26148203IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.2E-24149171IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860151171IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.2E-24180203IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MNCLCEKDSG LFSSHSTAPY VLGCPSWATS EFEVQRSSMS RSLSSKVDVL PQQCHNSKTF  60
NFQFQEQDAS STKSTDQSYP EVGQISVQHS STDSTLIRNE GKSMGCVIRS FMGSQDFPFP  120
PPLLDHRPIL PVETAPVRIP LQLDFAEEPI YVNSKQYHAI LRRRQYRAKL EALNKPIKDR  180
KPYLHESRHQ HALKRARGAG GRFLNTKKQL QSNHTPGNIA ESKMHHIENY RDGADVSYAF  240
NSDARNMQND AADKGGGTTQ QPLFVYM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-21147209264NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G027400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353121e-143AC235312.1 Glycine max strain Williams 82 clone GM_WBb0071J06, complete sequence.
GenBankEU0283141e-143EU028314.1 Glycine max clone BAC gmw1-6b18 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006597204.10.0nuclear transcription factor Y subunit A-3 isoform X3
TrEMBLK7M9730.0K7M973_SOYBN; Uncharacterized protein
STRINGGLYMA15G03175.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.19e-35nuclear factor Y, subunit A3