PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G027400.16.p
Common NameGLYMA_15G027400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YA
Protein Properties Length: 201aa    MW: 22563.5 Da    PI: 8.376
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G027400.16.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA45.62.3e-14152186136
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 
                           +ep+YVN+KQy++Il+RRq Rakle+ +k  +k rk
  Glyma.15G027400.16.p 152 EEPIYVNSKQYHAILRRRQYRAKLEALNKP-IKDRK 186
                           69************************9998.77776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.0E-5150195IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115217.276151200IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.6E-10153186IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860156176IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MNCLCEKDSG LFSSHSTAPY VLGCPSWATS EFEVQRSSMS RSLSSKVDVL PQQCHNSKTF  60
NFQFQEQDAS STKSTDQSYP EVGTVQSGQI SVQHSSTDST LIRNEGKSMG CVIRSFMGSQ  120
DFPFPPPLLD HRPILPVETA PVRIPLQLDF AEEPIYVNSK QYHAILRRRQ YRAKLEALNK  180
PIKDRKFCSR IFTSPAINMH *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G027400.16.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353121e-145AC235312.1 Glycine max strain Williams 82 clone GM_WBb0071J06, complete sequence.
GenBankEU0283141e-145EU028314.1 Glycine max clone BAC gmw1-6b18 genomic sequence.
GenBankEU0283151e-145EU028315.1 Glycine max clone BAC gmw1-9c4 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006597204.11e-137nuclear transcription factor Y subunit A-3 isoform X3
TrEMBLA0A0R0FVI31e-147A0A0R0FVI3_SOYBN; Uncharacterized protein
STRINGGLYMA15G03175.11e-136(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.14e-16nuclear factor Y, subunit A3