PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G027400.15.p | ||||||||
Common Name | GLYMA_15G027400, LOC100803893 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YA | ||||||||
Protein Properties | Length: 273aa MW: 30594.3 Da PI: 8.9168 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 98.4 | 7.6e-31 | 152 | 208 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVN+KQy++Il+RRq Rakle+ +k +k rkpylheSRh+hAl+R+Rg gGrF Glyma.15G027400.15.p 152 EEPIYVNSKQYHAILRRRQYRAKLEALNKP-IKDRKPYLHESRHQHALKRARGAGGRF 208 69***************************9.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.1E-34 | 150 | 211 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.164 | 151 | 211 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 8.1E-26 | 153 | 208 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.3E-24 | 154 | 176 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 156 | 176 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 7.3E-24 | 185 | 208 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MNCLCEKDSG LFSSHSTAPY VLGCPSWATS EFEVQRSSMS RSLSSKVDVL PQQCHNSKTF 60 NFQFQEQDAS STKSTDQSYP EVGTVQSGQI SVQHSSTDST LIRNEGKSMG CVIRSFMGSQ 120 DFPFPPPLLD HRPILPVETA PVRIPLQLDF AEEPIYVNSK QYHAILRRRQ YRAKLEALNK 180 PIKDRKPYLH ESRHQHALKR ARGAGGRFLN TKKQLQSNHT PGNIAESKMH HIENYRDGAD 240 VSYAFNSDAR NMQNDAADKG GGTTQQPLFV YM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 6e-21 | 152 | 214 | 2 | 64 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G027400.15.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235312 | 1e-145 | AC235312.1 Glycine max strain Williams 82 clone GM_WBb0071J06, complete sequence. | |||
GenBank | EU028314 | 1e-145 | EU028314.1 Glycine max clone BAC gmw1-6b18 genomic sequence. | |||
GenBank | EU028315 | 1e-145 | EU028315.1 Glycine max clone BAC gmw1-9c4 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006597204.1 | 0.0 | nuclear transcription factor Y subunit A-3 isoform X3 | ||||
TrEMBL | K7M972 | 0.0 | K7M972_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G03175.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 3e-35 | nuclear factor Y, subunit A3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G027400.15.p |
Entrez Gene | 100803893 |
Publications ? help Back to Top | |||
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