PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G027400.13.p
Common NameGLYMA_15G027400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YA
Protein Properties Length: 221aa    MW: 24697 Da    PI: 8.2142
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G027400.13.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA45.42.7e-14172206136
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 
                           +ep+YVN+KQy++Il+RRq Rakle+ +k  +k rk
  Glyma.15G027400.13.p 172 EEPIYVNSKQYHAILRRRQYRAKLEALNKP-IKDRK 206
                           69************************9998.77776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.0E-5170215IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115217.276171220IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.4E-10173206IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860176196IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MNCLCEKDSG LFSSHSTAPY VLGCPSWATS EFEVQRSSMS RSLSSKVDVL PQQCHNSKTF  60
NFQFQEQDAS STKSTDQSYP EVGQISVQHS STDSTLIRNE GKSMGCVIRS FMGSQDFPFP  120
PPLLDHRPIL AHIACHYADP CYSGLVAAAY SPQSKPVETA PVRIPLQLDF AEEPIYVNSK  180
QYHAILRRRQ YRAKLEALNK PIKDRKFCSR IFTSPAINMH *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G027400.13.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353121e-136AC235312.1 Glycine max strain Williams 82 clone GM_WBb0071J06, complete sequence.
GenBankEU0283141e-136EU028314.1 Glycine max clone BAC gmw1-6b18 genomic sequence.
GenBankEU0283151e-136EU028315.1 Glycine max clone BAC gmw1-9c4 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006597203.11e-153nuclear transcription factor Y subunit A-3 isoform X2
RefseqXP_028202603.11e-153nuclear transcription factor Y subunit A-3-like isoform X2
TrEMBLA0A0R0FVE41e-163A0A0R0FVE4_SOYBN; Uncharacterized protein
STRINGGLYMA15G03175.11e-116(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-26nuclear factor Y, subunit A3