PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G027400.12.p | ||||||||
Common Name | GLYMA_15G027400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YA | ||||||||
Protein Properties | Length: 196aa MW: 22091 Da PI: 8.376 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 45.6 | 2.3e-14 | 147 | 181 | 1 | 36 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 +ep+YVN+KQy++Il+RRq Rakle+ +k +k rk Glyma.15G027400.12.p 147 EEPIYVNSKQYHAILRRRQYRAKLEALNKP-IKDRK 181 69************************9998.77776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 5.0E-5 | 145 | 190 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 17.276 | 146 | 195 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.5E-10 | 148 | 181 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 151 | 171 | IPR018362 | CCAAT-binding factor, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MNCLCEKDSG LFSSHSTAPY VLGCPSWATS EFEVQRSSMS RSLSSKVDVL PQQCHNSKTF 60 NFQFQEQDAS STKSTDQSYP EVGQISVQHS STDSTLIRNE GKSMGCVIRS FMGSQDFPFP 120 PPLLDHRPIL PVETAPVRIP LQLDFAEEPI YVNSKQYHAI LRRRQYRAKL EALNKPIKDR 180 KFCSRIFTSP AINMH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G027400.12.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235312 | 1e-136 | AC235312.1 Glycine max strain Williams 82 clone GM_WBb0071J06, complete sequence. | |||
GenBank | EU028314 | 1e-136 | EU028314.1 Glycine max clone BAC gmw1-6b18 genomic sequence. | |||
GenBank | EU028315 | 1e-136 | EU028315.1 Glycine max clone BAC gmw1-9c4 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006597204.1 | 1e-123 | nuclear transcription factor Y subunit A-3 isoform X3 | ||||
TrEMBL | A0A0R0G4M9 | 1e-143 | A0A0R0G4M9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G03175.1 | 1e-122 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.2 | 1e-15 | nuclear factor Y, subunit A3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G027400.12.p |