PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.15G027400.1.p

Common Name

GLYMA_15G027400, LOC100803893

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YA

Protein Properties

Length: 298aa MW: 33200.2 Da PI: 8.6395

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.15G027400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	98.2	8.8e-31	177	233	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVN+KQy++Il+RRq Rakle+ +k +k rkpylheSRh+hAl+R+Rg gGrF Glyma.15G027400.1.p 177 EEPIYVNSKQYHAILRRRQYRAKLEALNKP-IKDRKPYLHESRHQHALKRARGAGGRF 233 69*************************9.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.1E-34	175	236	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.164	176	236	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	9.3E-26	178	233	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	9.7E-24	179	201	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	181	201	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	9.7E-24	210	233	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MNCLCEKDSG LFSSHSTAPY VLGCPSWATS EFEVQRSSMS RSLSSKVDVL PQQCHNSKTF 60 NFQFQEQDAS STKSTDQSYP EVGTVQSGQI SVQHSSTDST LIRNEGKSMG CVIRSFMGSQ 120 DFPFPPPLLD HRPILAHIAC HYADPCYSGL VAAAYSPQSK PVETAPVRIP LQLDFAEEPI 180 YVNSKQYHAI LRRRQYRAKL EALNKPIKDR KPYLHESRHQ HALKRARGAG GRFLNTKKQL 240 QSNHTPGNIA ESKMHHIENY RDGADVSYAF NSDARNMQND AADKGGGTTQ QPLFVYM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-20	177	239	2	64	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.15G027400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235312	1e-145	AC235312.1 Glycine max strain Williams 82 clone GM_WBb0071J06, complete sequence.
GenBank	EU028314	1e-145	EU028314.1 Glycine max clone BAC gmw1-6b18 genomic sequence.
GenBank	EU028315	1e-145	EU028315.1 Glycine max clone BAC gmw1-9c4 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006597200.1	0.0	nuclear transcription factor Y subunit A-3 isoform X1
Refseq	XP_006597201.1	0.0	nuclear transcription factor Y subunit A-3 isoform X1
Refseq	XP_014622861.1	0.0	nuclear transcription factor Y subunit A-3 isoform X1
TrEMBL	A0A0R0FVT3	0.0	A0A0R0FVT3_SOYBN; Uncharacterized protein
STRING	GLYMA15G03175.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10120	25	41
Representative plant	OGRP680	16	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	1e-46	nuclear factor Y, subunit A3

Link Out ? help Back to Top
Phytozome	Glyma.15G027400.1.p
Entrez Gene	100803893

Publications ? help Back to Top
Ma X, et al. Overexpression of wheat NF-YA10 gene regulates the salinity stress response in Arabidopsis thaliana. Plant Physiol. Biochem., 2015. 86: p. 34-43 [PMID:25461698]