PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G025500.1.p
Common NameGLYMA_15G025500, LOC102662609
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 354aa    MW: 39786.8 Da    PI: 6.7016
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G025500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66e-181461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg W++eEde+l+++++ +G g+W+++++  g+ R++k+c++rw +yl
  Glyma.15G025500.1.p 14 RGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                         788*******************************************97 PP
2Myb_DNA-binding491.4e-1567110146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+++++E  l+++++  lG++ W+ Ia++++ gRt++++k++w++
  Glyma.15G025500.1.p  67 RGSFSPQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWNS 110
                          899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-27664IPR009057Homeodomain-like
PROSITE profilePS5129418.315961IPR017930Myb domain
SuperFamilySSF466891.95E-2911108IPR009057Homeodomain-like
SMARTSM007172.0E-131363IPR001005SANT/Myb domain
PfamPF002491.1E-151461IPR001005SANT/Myb domain
CDDcd001674.61E-121761No hitNo description
PROSITE profilePS5129425.41262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-2565116IPR009057Homeodomain-like
SMARTSM007176.1E-1666114IPR001005SANT/Myb domain
PfamPF002492.2E-1467110IPR001005SANT/Myb domain
CDDcd001672.23E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIT TYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIIE LHSILGNRWA QIAKHLPGRT DNEVKNFWNS NIKKKLLSHD  120
VVPSLATFSD IHGPPNSSME SFFPLTDNPI LNSHHHLDQL FLPIIPSPIL QAFDHHHHNN  180
DIKHIDINNF NNNNANFLHF QNPMPETVPP ISNNIPSLYQ EDTWSSLGCV PIHLNPNQEN  240
QIMITKSDHT TPHLIVDKFV NPSTWQQQHS VEVEPPIVPK VCESIEDYVC SIPYSSSANS  300
HEEAVACYTP AVICPQDQTA APNQVEYIDA LIMSSLPSTT TSSSSVSFFQ ANK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G025500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014622986.10.0transcription factor MYB26
RefseqXP_028203640.10.0transcription factor MYB26-like
TrEMBLA0A445GN600.0A0A445GN60_GLYSO; Transcription factor MYB26
TrEMBLK7M9650.0K7M965_SOYBN; Uncharacterized protein
STRINGGLYMA15G02955.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30143168
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.24e-81myb domain protein 26