PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G022000.1.p
Common NameGLYMA_15G022000, LOC100793830
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 446aa    MW: 48891.4 Da    PI: 6.3162
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G022000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.97.3e-08353393954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r+RR+ri +++  L++++P        K++ a++L +A +Y+k L
  Glyma.15G022000.1.p 353 ARQRRERISERIRVLQKIVPGG-----SKMDTASMLDEAANYLKFL 393
                          69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.021344393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-14349409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-12350399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-11352406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-5353393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.80E-4366398No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDGLSWDASS QLVANTPVLW STQSQDLEGD YHHSMPHLSS SVLNNQTGYA YPSSEKARGM  60
VQLSTMSEIM SMMPNTNLPQ RITATMPVKS GAAGASWEEA LISQSCPSLS VNMNQTSNYV  120
ADLNKAHQQQ QQLINGTQNG KATTCSLDQS IDCLLSATNN SNTDASVEDD GISMILSDCR  180
NLWNNFSYGS AASSGESDSN ASINARNSDM RYPSVSELDE SVSQSFSDQY LSQGRVIDSE  240
VICTKRSSSS CFSIAQNSSA TEGGFRLISE TSPKSKRPRW IHKHPGSSNI NFQQPNSSVT  300
PSFEEPDPEV IAQMKEMIYR AAAFRPVNLG LEAVEKPKRK NVRISTDPQT VAARQRRERI  360
SERIRVLQKI VPGGSKMDTA SMLDEAANYL KFLRSQVKAL ENLGNKLDTM NCPPTNIDFS  420
FNPSFPIQTH FPIQNPSSHI QYSKG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1353358RQRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G022000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025981487.10.0transcription factor bHLH87
SwissprotQ8S3D23e-82BH087_ARATH; Transcription factor bHLH87
TrEMBLK7M9410.0K7M941_SOYBN; Uncharacterized protein
STRINGGLYMA15G02531.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Representative plantOGRP10281610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.14e-72bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]