PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G016500.3.p
Common NameGLYMA_15G016500, LOC100809926
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 508aa    MW: 57085.5 Da    PI: 5.9871
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G016500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.11.2e-2198153156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          r+k +++t++q++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Glyma.15G016500.3.p  98 RKKYHRHTADQIKEMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 153
                          7999************************************************9877 PP
2START228.71.7e-712704905206
                          HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
                START   5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                          +a++el+k+a+++ep+W +s     e++n+de++++f+ +++      +s+ea+r+++vv+ +l++lv+++ld++ qW+e+++    ka+
  Glyma.15G016500.3.p 270 QAMEELIKMATVGEPLWLRSFetgrEILNYDEYVREFAVENSssgkprRSIEASRDTAVVFVDLPRLVQSFLDVN-QWKEMFPclisKAA 358
                          799*****************99***************9888899*******************************.************** PP

                          EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
                START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                          t++vi++g      ga+qlm+aelq+l+p+vp R+++fvR+++ql+a++w+ivdvS+d  +++  ++s+v+++++pSg++ie+ksngh+k
  Glyma.15G016500.3.p 359 TVDVICNGegpgrnGAVQLMFAELQMLTPMVPtREVYFVRFCKQLSAEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCK 447
                          **************************************************************98.9************************ PP

                          EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          v+wveh +++++ +h+++r +v+sgla+ga++w atlq qce+
  Glyma.15G016500.3.p 448 VIWVEHLECQKSAVHSMYRTIVNSGLAFGARHWIATLQLQCER 490
                          *****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-2384149IPR009057Homeodomain-like
SuperFamilySSF466891.67E-2087156IPR009057Homeodomain-like
PROSITE profilePS5007118.05895155IPR001356Homeobox domain
SMARTSM003891.1E-1897159IPR001356Homeobox domain
PfamPF000465.6E-1998153IPR001356Homeobox domain
CDDcd000861.06E-16102153No hitNo description
PROSITE patternPS000270130153IPR017970Homeobox, conserved site
PROSITE profilePS5084838.276257493IPR002913START domain
SuperFamilySSF559611.09E-31259490No hitNo description
CDDcd088752.76E-116261489No hitNo description
SMARTSM002347.1E-71266490IPR002913START domain
PfamPF018521.9E-56269490IPR002913START domain
Gene3DG3DSA:3.30.530.201.7E-4321485IPR023393START-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MAADMSNNNN PPPTSHAKDF FASPALSLSL AGIFRHAGVA AADEAATSVE EGEECERLDD  60
ISSENSGPTR SRSEDDFEVE AEHEDDDADG DKNKNKKRKK YHRHTADQIK EMEALFKESP  120
HPDEKQRQQL SKQLGLAPRQ VKFWFQNRRT QIKAIQERHE NSLLKSEIEK LKEKNKTLRE  180
TINKACCPNC GVPTTSRDGA MPTEEQQLRI ENAKLKAEVE KLRAVLGKYA PGSTSPSCSS  240
GHDQENRSSL DFYTGIFGLD KSRIMDTVNQ AMEELIKMAT VGEPLWLRSF ETGREILNYD  300
EYVREFAVEN SSSGKPRRSI EASRDTAVVF VDLPRLVQSF LDVNQWKEMF PCLISKAATV  360
DVICNGEGPG RNGAVQLMFA ELQMLTPMVP TREVYFVRFC KQLSAEQWAI VDVSIDKVED  420
NIDASLVKCR KRPSGCIIED KSNGHCKVIW VEHLECQKSA VHSMYRTIVN SGLAFGARHW  480
IATLQLQCER LVFFMATNVP MKDSTGE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19599KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.375220.0seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing trichomes.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G016500.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311710.0KT031171.1 Glycine max clone HN_CCL_120 homeodomain/HOMEOBOX transcription factor (Glyma13g43350.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546423.20.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLI1MCR00.0I1MCR0_SOYBN; Uncharacterized protein
TrEMBLI1MCR20.0I1MCR2_SOYBN; Uncharacterized protein
STRINGGLYMA15G01960.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]