PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G016500.2.p | ||||||||
Common Name | GLYMA_15G016500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 619aa MW: 69344.8 Da PI: 6.7364 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.7 | 1.5e-21 | 98 | 153 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t++q++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k Glyma.15G016500.2.p 98 RKKYHRHTADQIKEMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 153 7999************************************************9877 PP | |||||||
2 | START | 228 | 2.7e-71 | 270 | 490 | 5 | 206 |
HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 +a++el+k+a+++ep+W +s e++n+de++++f+ +++ +s+ea+r+++vv+ +l++lv+++ld++ qW+e+++ ka+ Glyma.15G016500.2.p 270 QAMEELIKMATVGEPLWLRSFetgrEILNYDEYVREFAVENSssgkprRSIEASRDTAVVFVDLPRLVQSFLDVN-QWKEMFPclisKAA 358 799*****************99***************9888899*******************************.************** PP EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163 t++vi++g ga+qlm+aelq+l+p+vp R+++fvR+++ql+a++w+ivdvS+d +++ ++s+v+++++pSg++ie+ksngh+k Glyma.15G016500.2.p 359 TVDVICNGegpgrnGAVQLMFAELQMLTPMVPtREVYFVRFCKQLSAEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCK 447 **************************************************************98.9************************ PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 v+wveh +++++ +h+++r +v+sgla+ga++w atlq qce+ Glyma.15G016500.2.p 448 VIWVEHLECQKSAVHSMYRTIVNSGLAFGARHWIATLQLQCER 490 *****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.9E-23 | 84 | 149 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.26E-20 | 87 | 156 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.058 | 95 | 155 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-18 | 97 | 159 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.3E-19 | 98 | 153 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.02E-16 | 102 | 153 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 130 | 153 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 38.276 | 257 | 493 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.65E-31 | 259 | 490 | No hit | No description |
CDD | cd08875 | 1.37E-114 | 261 | 489 | No hit | No description |
SMART | SM00234 | 7.1E-71 | 266 | 490 | IPR002913 | START domain |
Pfam | PF01852 | 3.0E-56 | 269 | 490 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.6E-4 | 321 | 485 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 9.34E-7 | 512 | 596 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010062 | Biological Process | negative regulation of trichoblast fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 619 aa Download sequence Send to blast |
MAADMSNNNN PPPTSHAKDF FASPALSLSL AGIFRHAGVA AADEAATSVE EGEECERLDD 60 ISSENSGPTR SRSEDDFEVE AEHEDDDADG DKNKNKKRKK YHRHTADQIK EMEALFKESP 120 HPDEKQRQQL SKQLGLAPRQ VKFWFQNRRT QIKAIQERHE NSLLKSEIEK LKEKNKTLRE 180 TINKACCPNC GVPTTSRDGA MPTEEQQLRI ENAKLKAEVE KLRAVLGKYA PGSTSPSCSS 240 GHDQENRSSL DFYTGIFGLD KSRIMDTVNQ AMEELIKMAT VGEPLWLRSF ETGREILNYD 300 EYVREFAVEN SSSGKPRRSI EASRDTAVVF VDLPRLVQSF LDVNQWKEMF PCLISKAATV 360 DVICNGEGPG RNGAVQLMFA ELQMLTPMVP TREVYFVRFC KQLSAEQWAI VDVSIDKVED 420 NIDASLVKCR KRPSGCIIED KSNGHCKVIW VEHLECQKSA VHSMYRTIVN SGLAFGARHW 480 IATLQLQCER LVFFMATNVP MKDSTGVATL AGRKSILKLA QRMTWSFCHA IGASSFHTWT 540 KFTSKTGEDI RISSRKNLND PGEPLGLILC AVCSVWLPVS PNVLFDFLRD ETRRTEVPLS 600 CLLSFSILLS ILVNNLNG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 99 | KKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.37522 | 0.0 | seed coat |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing trichomes. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G016500.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031171 | 0.0 | KT031171.1 Glycine max clone HN_CCL_120 homeodomain/HOMEOBOX transcription factor (Glyma13g43350.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003546423.2 | 0.0 | homeobox-leucine zipper protein GLABRA 2 | ||||
Swissprot | P46607 | 0.0 | HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2 | ||||
TrEMBL | I1MCR1 | 0.0 | I1MCR1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G01960.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79840.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G016500.2.p |
Publications ? help Back to Top | |||
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