PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G005000.3.p
Common NameGLYMA_15G005000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 236aa    MW: 26411.2 Da    PI: 6.5171
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G005000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.5e-1385134155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++ ++f  L   +P +      K +K+++L kA++Y+k+Lq
  Glyma.15G005000.3.p  85 KRASHIMAERKRRQQLTQSFIALSATIPGL-----NKKDKSSMLGKAIDYVKQLQ 134
                          79***************************8.....599****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.11E-1882154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-1182137No hitNo description
PROSITE profilePS5088815.16784133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-1785149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-1185134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-1390139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEQSYSWENW ALDKEMGEDE EEFLRDILSK PAFSSESESQ APVVSCSAKS KRAPMTYILS  60
FDNSTITPAP SSPPTLEAQP GKRAKRASHI MAERKRRQQL TQSFIALSAT IPGLNKKDKS  120
SMLGKAIDYV KQLQERVTEL EQRKKRGKES MIILKKSEAN SEDCCRANKM LPDVEARVTE  180
NEVLIEIHCE KEDGLELIKI LDHLENLHLC VTASSVLPFG NSTLSITIIA QVHIH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19297ERKRRQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.304620.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G005000.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0985340.0BT098534.1 Soybean clone JCVI-FLGm-12J15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014623788.11e-171transcription factor bHLH25 isoform X2
SwissprotQ9T0724e-38BH025_ARATH; Transcription factor bHLH25
TrEMBLI1MCC51e-173I1MCC5_SOYBN; Uncharacterized protein
STRINGGLYMA15G00730.11e-170(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-40bHLH family protein