PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.14G216400.1.p

Common Name

GLYMA_14G216400, LOC100794846

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SRS

Protein Properties

Length: 334aa MW: 36073.6 Da PI: 7.2692

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.14G216400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	223.9	3.3e-69	117	268	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel.kskkqsalsst 89 g+++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrerqqql+a++++++++ + ++skr+re+ + +++ +l++ Glyma.14G216400.1.p 117 GGGMNCQDCGNQAKKDCQHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSALQQQQNQHPqfRGDHSKRHRESiEGAAAGSLACV 206 5789**************************************************9999888766788999999987233444455555 PP DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++ +++ le ++P+e++s+avfrcv+vs++d +e +aYqtav+igGhvfkGiLydqG++ Glyma.14G216400.1.p 207 PVPI--TTTGLELGQFPPELNSPAVFRCVKVSAMDAPDERYAYQTAVNIGGHVFKGILYDQGMD 268 5555..56679999**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.2E-65	119	268	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	8.8E-27	121	163	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.1E-24	219	267	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MAGFFSLGAG RQNKAEQEED QREENVNNAG GNNNSQFLFR NNVSEEIYNK GFEIWPQSSY 60 HHHQNLTNFY SFGVGPSRRN NHNNSSSNNV NDDVSVSFSD ESNRFGFTVM SSGGGGGGGM 120 NCQDCGNQAK KDCQHLRCRT CCKSRGFQCQ THVKSTWVPA AKRRERQQQL SALQQQQNQH 180 PQFRGDHSKR HRESIEGAAA GSLACVPVPI TTTGLELGQF PPELNSPAVF RCVKVSAMDA 240 PDERYAYQTA VNIGGHVFKG ILYDQGMDGP YAGAGCEGSS GVGGEAQPLS LMAAATTTTA 300 ATTTSGNPFE ASLYTAPMNA YMAGTHFFPP SRS*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: In young plants, detected at a low level only in the root tips and lateral root primordia. In fully open flowers, primarily observed in the filaments and anthers. {ECO:0000269\|PubMed:20706774}.
Uniprot	TISSUE SPECIFICITY: Mainly expressed in the filaments of flowers, the shoot apex regions and pollen. Also present in leaves. {ECO:0000269\|PubMed:20706774}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:20706774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.14G216400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003544404.1	0.0	protein SHI RELATED SEQUENCE 7
Refseq	XP_028199745.1	0.0	protein SHI RELATED SEQUENCE 7-like
Swissprot	Q9FXH7	9e-81	SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
TrEMBL	A0A445H972	0.0	A0A445H972_GLYSO; Protein SHI RELATED SEQUENCE 7
TrEMBL	I1MC67	0.0	I1MC67_SOYBN; Uncharacterized protein
STRING	GLYMA14G40660.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125
Representative plant	OGRP1872	11	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	3e-65	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	Glyma.14G216400.1.p
Entrez Gene	100794846

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]