PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.14G212000.5.p | ||||||||
Common Name | GLYMA_14G212000, LOC100794851 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 258aa MW: 28151.2 Da PI: 5.535 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00034 | 106 | 128 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Glyma.14G212000.5.p 106 FSCNYCQRKFFSSQALGGHQNAH 128 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.99E-6 | 104 | 133 | No hit | No description |
PROSITE profile | PS50157 | 11.344 | 106 | 133 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 108 | 128 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence Send to blast |
MKPNFDLEVE ACAEYESEVS SQVASNVSIQ ETSIGPCSDS LTNISNITNP IGIHPNSDAI 60 SLDLSLNFKN SEPGGRDSIG FSFSSTSESS NEPASQTTAA TIPRVFSCNY CQRKFFSSQA 120 LGGHQNAHKR ERTLAKRAMR MGFFSERYAN LASLPLHGSF RSLGIKAHSS LHHGFLPTMR 180 PPEIKSNARY DQGYLGHPIF LEDDESDLLW PGSFRQVAEA GDSHQNFILT GSSNMSFTEV 240 NPPVDIENST PDLTLKL* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.22064 | 0.0 | hypocotyl| seed coat |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.14G212000.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT093856 | 0.0 | BT093856.1 Soybean clone JCVI-FLGm-17J14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001241479.1 | 0.0 | uncharacterized protein LOC100794851 | ||||
Refseq | XP_006595568.1 | 0.0 | uncharacterized protein LOC100794851 isoform X1 | ||||
Refseq | XP_006595569.1 | 0.0 | uncharacterized protein LOC100794851 isoform X1 | ||||
Refseq | XP_025981064.1 | 0.0 | uncharacterized protein LOC100794851 isoform X1 | ||||
Refseq | XP_028201365.1 | 0.0 | zinc finger protein 4-like | ||||
Refseq | XP_028201366.1 | 0.0 | zinc finger protein 4-like | ||||
Swissprot | Q39263 | 7e-51 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | A0A445H9H2 | 0.0 | A0A445H9H2_GLYSO; Zinc finger protein 4 isoform A | ||||
TrEMBL | C6T8Q3 | 0.0 | C6T8Q3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G39280.4 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66140.1 | 8e-53 | zinc finger protein 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.14G212000.5.p |
Entrez Gene | 100794851 |
Publications ? help Back to Top | |||
---|---|---|---|
|