PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G205600.1.p
Common NameGLYMA_14G205600, LOC100800489
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 283aa    MW: 31771.2 Da    PI: 7.0107
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G205600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19125174255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +++GVr++  +grW+AeIrdp+    r kr +lg+f+taeeAa  +++a+ kl+g
  Glyma.14G205600.1.p 125 KFRGVRQRQ-WGRWAAEIRDPT----RrKRLWLGTFDTAEEAATEYDRAAVKLKG 174
                          89****999.**********84....34************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381234.5E-888282IPR017392AP2/ERF transcription factor ERF/PTI6
SMARTSM003806.5E-36125188IPR001471AP2/ERF domain
PROSITE profilePS5103223.999125182IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-22125183IPR016177DNA-binding domain
CDDcd000181.26E-31125182No hitNo description
Gene3DG3DSA:3.30.730.103.3E-30125183IPR001471AP2/ERF domain
PfamPF008472.3E-12125174IPR001471AP2/ERF domain
PRINTSPR003671.5E-9126137IPR001471AP2/ERF domain
PRINTSPR003671.5E-9148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSVHAKLKHH PMNLASPSSH FEDDPPCKTK TKTQRRLLRI IITDHDATDS DSSDEEQQQQ  60
QQKTRRVNRE ITQINMQLPL SHNSSFSPSS SYYSSASTSS EQNLKCKRPN KKPPPSSAEA  120
RRRNKFRGVR QRQWGRWAAE IRDPTRRKRL WLGTFDTAEE AATEYDRAAV KLKGPNAVTN  180
FPLAPEATAQ SPPLAADNLS SDGGASYSDL VASPTSVLAY ECDSTPFDGF RYLDVDAFGF  240
HIDAPLSLPE VNVNVALTCH HGKKQEEAFD EFDLDEFMTW PY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-19126183361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-19126183664ATERF1
3gcc_A7e-19126183664ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.45430.0leaf| meristem| root| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G205600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312500.0KT031250.1 Glycine max clone HN_CCL_182 AP2-EREBP transcription factor (Glyma02g40320.1_like1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544338.10.0pathogenesis-related genes transcriptional activator PTI6
TrEMBLI1MBL70.0I1MBL7_SOYBN; Uncharacterized protein
STRINGGLYMA14G38610.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-32cytokinin response factor 4