PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G204100.1.p
Common NameGLYMA_14G204100, LOC778172
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 363aa    MW: 39059.3 Da    PI: 6.6581
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G204100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.32.1e-10164216557
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                          kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  ++    
  Glyma.14G204100.1.p 164 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTT 216
                          9*****************************************99988876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.3E-16160224IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.749162225IPR004827Basic-leucine zipper domain
PfamPF001705.3E-9164219IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.1E-10164218No hitNo description
SuperFamilySSF579597.03E-11164215No hitNo description
CDDcd147034.21E-24165214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MQDPSSNPNS NPNPNPHNAN AASQLPRPPP ATTAGAGASS SSLFARSGGP HHRRAHSEVS  60
FRLPDDMMDL SPSDPFAGGS STASMEEIGS EDDLFSTYID VDKLGGANGS GASGNGADPT  120
GETEKSPARP RHRHSSSVDF GEIMDAKKAM PPDKLAELWT IDPKRAKRIL ANRQSAARSK  180
ERKARYIQEL ERKVQTLQTE ATTLSAQLTL YQRDTTGLST ENTELKLRLQ AMEQQAQLRD  240
ALNEALKKEV ERLKVATGEM MSHTDSFNLG MHLMPFSGSN FVPIPPQSGP SGHQNMQMPP  300
FGLTPSTMPS HLLHQTSSHP YSEILQNDQL GRFQGLDISS KGSTLVKSEG PSLSASESST  360
TF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.300300.0cotyledon
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269|PubMed:27896439}.
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G204100.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-132AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544931.10.0transcription factor RF2b
SwissprotO228731e-103BZP18_ARATH; bZIP transcription factor 18
TrEMBLI1MBK70.0I1MBK7_SOYBN; Uncharacterized protein
STRINGGLYMA14G38460.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15483497
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06850.14e-86basic leucine-zipper 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Liao Y, et al.
    Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis.
    Planta, 2008. 228(2): p. 225-40
    [PMID:18365246]
  3. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  4. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  6. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]