PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G200200.1.p | ||||||||
Common Name | GLYMA_14G200200, LOC100127393 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 576aa MW: 62955.9 Da PI: 7.409 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106 | 1.9e-33 | 234 | 291 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh+k Glyma.14G200200.1.p 234 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGTHNHPK 291 8****************************************.***************85 PP | |||||||
2 | WRKY | 106.6 | 1.2e-33 | 405 | 463 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+ Glyma.14G200200.1.p 405 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHD 463 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.7E-28 | 227 | 292 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.26E-25 | 232 | 292 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-36 | 233 | 291 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.9E-26 | 234 | 290 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.778 | 234 | 292 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.6E-38 | 390 | 465 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.19E-29 | 397 | 465 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.147 | 400 | 465 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-39 | 405 | 464 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.0E-26 | 406 | 463 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 576 aa Download sequence Send to blast |
MASSSGSLDT SASANSFTNF TFSTHPFMTT SFSDLLASPL DNNKPPQGGL SERTGSGVPK 60 FKSTPPPSLP LSPPPISPSS YFAIPPGLSP AELLDSPVLL NSSNILPSPT TGAFVAQSFN 120 WKSSSGGNQQ IVKEEDKSFS NFSFQTRSGP PASSTATYQS SNVTVQTQQP WSFQEATKQD 180 NFSSGKGMMK TENSSSMQSF SPEIASVQTN HSNGFQSDYG NYPPQSQTLS RRSDDGYNWR 240 KYGQKQVKGS ENPRSYYKCT YPNCPTKKKV ERSLDGQITE IVYKGTHNHP KPQNTRRNSS 300 NSSSLAIPHS NSIRTEIPDQ SYATHGSGQM DSAATPENSS ISIGDDDFEQ SSQKCKSGGD 360 EYDEDEPDAK RWKIEGENEG MSAPGSRTVR EPRVVVQTTS DIDILDDGYR WRKYGQKVVK 420 GNPNPRSYYK CTHPGCPVRK HVERASHDLR AVITTYEGKH NHDVPAARGS GSHSVNRPMP 480 NNASNHTNTA ATSVRLLPVI HQSDNSLQNQ RSQAPPEGQS PFTLEMLQSP GSFGFSGFGN 540 PMQSYVNQQQ LSDNVFSSRT KEEPRDDMFL ESLLC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-37 | 234 | 466 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-37 | 234 | 466 | 8 | 78 | Probable WRKY transcription factor 4 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.35878 | 0.0 | epicotyl| flower| leaf| meristem| root| somatic embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000269|PubMed:19199048}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aleurone cells (PubMed:15618416). Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos (PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:26025535}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G200200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM587700 | 0.0 | KM587700.1 Glycine max clone GmWRKY42 WRKY mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001304523.1 | 0.0 | WRKY transcription factor 49 | ||||
Refseq | XP_028200012.1 | 0.0 | WRKY transcription factor WRKY24-like | ||||
Swissprot | Q6IEQ7 | 1e-144 | WRK24_ORYSJ; WRKY transcription factor WRKY24 | ||||
TrEMBL | A0A0B2QCX8 | 0.0 | A0A0B2QCX8_GLYSO; Putative WRKY transcription factor 33 | ||||
TrEMBL | I1MBH2 | 0.0 | I1MBH2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G38010.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1077 | 34 | 114 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 1e-106 | WRKY DNA-binding protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G200200.1.p |
Entrez Gene | 100127393 |
Publications ? help Back to Top | |||
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