PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G192600.1.p | ||||||||
Common Name | GLYMA_14G192600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 384aa MW: 43956.4 Da PI: 9.532 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.9 | 4.3e-17 | 108 | 154 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W +eEd +l+++vkq+G + W+ Ia+++ gR +kqc++rw+++l Glyma.14G192600.1.p 108 KGQWNKEEDRKLIRLVKQYGERKWAEIAEKLE-GRVGKQCRERWNNHL 154 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 46.1 | 1.1e-14 | 160 | 202 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W++eE+ +lvd +++lG++ W Ia+++ gR+++ +k++w+ Glyma.14G192600.1.p 160 KDSWSEEEERILVDTHARLGNR-WCEIAKHIT-GRSENAIKNHWN 202 679*******************.********9.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.185 | 102 | 158 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.75E-27 | 107 | 201 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-16 | 107 | 156 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-27 | 109 | 162 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.9E-18 | 111 | 168 | No hit | No description |
CDD | cd00167 | 7.91E-16 | 111 | 154 | No hit | No description |
PROSITE profile | PS51294 | 17.678 | 159 | 209 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-13 | 159 | 207 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.69E-10 | 162 | 202 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-19 | 163 | 207 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MVRGGSQGGD NNGFQIYGCE VINASNNPPL TAIGIDRFLC GHFPHQQQHA RNYNAANVFA 60 DEEAFNNKWT HINQTPTLCP KGMHVLGKNA KVVGRRSKKK QSPVCWIKGQ WNKEEDRKLI 120 RLVKQYGERK WAEIAEKLEG RVGKQCRERW NNHLRPDIKK DSWSEEEERI LVDTHARLGN 180 RWCEIAKHIT GRSENAIKNH WNATIRRQNS KRKNKKTKSS INRKPHSSIL EDYIRSQNQT 240 TSSNPTPGII TATDTIHTTL SQDNAANPLH PVFYEPLAND LLFMKQIFKE NVEVSKHSKM 300 PSTSYLDYCQ MNVDDVGECE YSLQYLDINN INMHLNDASL FPRETHPTHI SYLPSDLHLS 360 HLFNVAPGYG NQNGFSTSRL FRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-42 | 107 | 208 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-42 | 107 | 208 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G192600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006596905.2 | 0.0 | transcription factor MYB64 | ||||
TrEMBL | K7M809 | 0.0 | K7M809_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G37140.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4129 | 31 | 58 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11050.1 | 1e-59 | myb domain protein 64 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G192600.1.p |