PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G191700.1.p
Common NameGLYMA_14G191700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 308aa    MW: 34672.8 Da    PI: 9.0615
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G191700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.9e-103276345
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                         +WT+eE +l+ +a + + ++   +W+++a++++ g+t  +++  + 
  Glyma.14G191700.1.p 32 KWTPEENKLFENALAVHDKDtpdRWHKVAEMIP-GKTVVDVIRQYK 76
                         8********************************.******998886 PP
2Myb_DNA-binding44.73.2e-14138182347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Glyma.14G191700.1.p 138 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 182
                          8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-52776IPR009057Homeodomain-like
PROSITE profilePS5129310.6272883IPR017884SANT domain
SMARTSM007176.2E-112981IPR001005SANT/Myb domain
SuperFamilySSF466894.99E-123183IPR009057Homeodomain-like
PfamPF002494.5E-93277IPR001005SANT/Myb domain
CDDcd001673.07E-93278No hitNo description
PROSITE profilePS5129421.348131187IPR017930Myb domain
SuperFamilySSF466899.72E-17133186IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-17134186IPR006447Myb domain, plants
SMARTSM007175.3E-13135185IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-12135182IPR009057Homeodomain-like
PfamPF002491.1E-12138182IPR001005SANT/Myb domain
CDDcd001675.25E-11138183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MKWESITLSS PTSCTPNSNT NWLVENNSRS TKWTPEENKL FENALAVHDK DTPDRWHKVA  60
EMIPGKTVVD VIRQYKELEV DVSNIEAGLI PVPGYSSTAI SPFTLDWVNT PGYDGFKGCG  120
KRPSSVRPIE HERKKGVPWT EEEHKLFLLG LKKYGKGDWR NISRNFVITR TPTQVASHAQ  180
KYFIRQLSGG KDKRRASIHD ITTVNLTETI TTSCSEDTNR STSPHVLSQP QQQNSTPTTP  240
RTHFQWTNQS NTGVAMTLNP AHERVFMSPY GANSFGVKIE GQNLHESSYL GPQTQNMVFQ  300
MQQSSQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1433991177RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.112760.0epicotyl| hypocotyl| leaf| pod| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G191700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-172AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235675.20.0MYB transcription factor MYB57
RefseqXP_028201123.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H71e-115DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A445H8230.0A0A445H823_GLYSO; Transcription factor DIVARICATA
TrEMBLI1MB920.0I1MB92_SOYBN; Uncharacterized protein
STRINGGLYMA14G37050.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.16e-82MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]