PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G182800.1.p
Common NameGLYMA_14G182800, LOC100810269
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 308aa    MW: 33286.7 Da    PI: 6.7118
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G182800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.33.2e-16207242134
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C++Cg ++  Tp++Rrgp+g+++LCnaCGl+++ +g
  Glyma.14G182800.1.p 207 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANRG 242
                          *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.88371106IPR010399Tify domain
SMARTSM009797.8E-1371106IPR010399Tify domain
PfamPF062001.4E-1374105IPR010399Tify domain
PROSITE profilePS5101712.6139181IPR010402CCT domain
PfamPF062031.1E-15139181IPR010402CCT domain
PROSITE profilePS5011410.211201252IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-15201254IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-12203253No hitNo description
Gene3DG3DSA:3.30.50.101.3E-15205248IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.17E-15206252No hitNo description
PROSITE patternPS003440207234IPR000679Zinc finger, GATA-type
PfamPF003206.2E-14207242IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEPSAMYGHS QPLSMPSQIG GGESDDGSGN EHAVDGHHHH IQYETHALED GAAVVVEDVT  60
SDAVYVSGGG GPVESSQLTL SFRGQVYVFD AVTPDKVQAV LLLLGGCELS SGGSPCVDPG  120
AQHNQRGSME FPKCSLPHRA ASLHRFRQKR KERCFDKKVR YSVRQEVALR MHRNKGQFTS  180
SKKQDGANSY GTDQDSGQDD SQSETSCTHC GISSKSTPMM RRGPSGPRSL CNACGLFWAN  240
RGALRDLSKR NQEHSLPPVE QVDEGNDSDC RTATADPAHN NLPAFSEHDN PALVADHKVF  300
QSQKMLK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.137500.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G182800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544834.10.0GATA transcription factor 25
RefseqXP_028198286.10.0GATA transcription factor 25-like
SwissprotQ9LRH61e-86GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A445H7H90.0A0A445H7H9_GLYSO; GATA transcription factor 25
TrEMBLI1MB130.0I1MB13_SOYBN; Uncharacterized protein
STRINGGLYMA14G36150.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.23e-77GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]