PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G179600.1.p | ||||||||
Common Name | GLYMA_14G179600, LOC100776421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ZF-HD | ||||||||
Protein Properties | Length: 261aa MW: 28515.8 Da PI: 7.0421 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 96.1 | 2.7e-30 | 56 | 111 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +vrY+eC+kNhA+s GghavDGC+Efm++ ge+gt +a+ CaAC+CHRnFHR+e + Glyma.14G179600.1.p 56 AVRYRECQKNHAVSFGGHAVDGCCEFMAA-GEDGTLEAVICAACNCHRNFHRKEIDG 111 79**************************9.999********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.0E-28 | 57 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.4E-26 | 58 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-20 | 58 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.049 | 59 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.69E-21 | 183 | 258 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.2E-32 | 186 | 259 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.0E-25 | 197 | 253 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MEFDEQEEHE EEEMVMPEPA AVSAPPSYDS LGNSGAMSKL GGGEGRKTAL GAAAAAVRYR 60 ECQKNHAVSF GGHAVDGCCE FMAAGEDGTL EAVICAACNC HRNFHRKEID GEITSFHYRA 120 QPPPPPMHHH HQFSPYYHHR VPQHPAAAGY LHHHLTPPMS QHRPLALPAA ASGGGLSREE 180 EDMSNPSSSG GGGGGSKKRF RTKFTQEQKD KMLAFAEQLG WRIQKHDESA VEQFCAETNV 240 KRNVLKVWMH NNKSTLGKKP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-28 | 196 | 255 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G179600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003544235.1 | 0.0 | zinc-finger homeodomain protein 2 | ||||
Swissprot | A2Z259 | 1e-73 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
Swissprot | Q6YXH5 | 1e-73 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
Swissprot | Q9SB61 | 3e-74 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | I1MAY5 | 0.0 | I1MAY5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G35770.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 | Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 3e-66 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G179600.1.p |
Entrez Gene | 100776421 |
Publications ? help Back to Top | |||
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